SMTL ID : 4m5b.1

Crystal Structure of an Truncated Transition Metal Transporter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

23 x HEZ: HEXANE-1,6-DIOL(Non-covalent)(Non-functional Binders)

HEZ.1: 3 residues within 4Å: Chain A: T.12, E.157, L.160 Ligand excluded by PLIP HEZ.2: 2 residues within 4Å: Chain A: M.187 Ligands: HEZ.3 Ligand excluded by PLIP HEZ.3: 2 residues within 4Å: Chain A: L.191 Ligands: HEZ.2 Ligand excluded by PLIP HEZ.4: 1 residues within 4Å: Chain A: Y.144 Ligand excluded by PLIP HEZ.5: 2 residues within 4Å: Chain A: Y.144, L.191 Ligand excluded by PLIP HEZ.6: 6 residues within 4Å: Chain A: V.136, A.140, A.199, V.200, L.204, Y.207 Ligand excluded by PLIP HEZ.7: 2 residues within 4Å: Chain A: L.133, I.141 Ligand excluded by PLIP HEZ.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP HEZ.9: 2 residues within 4Å: Chain A: L.24, T.88 Ligand excluded by PLIP HEZ.10: 6 residues within 4Å: Chain A: A.95, L.96, L.97, F.98, G.99, I.103 Ligand excluded by PLIP HEZ.11: 5 residues within 4Å: Chain A: G.6, Y.7, Y.174, P.176, Y.177 Ligand excluded by PLIP HEZ.12: 7 residues within 4Å: Chain A: A.42, G.46, F.49, L.73, L.74, T.77, L.78 Ligand excluded by PLIP HEZ.13: 2 residues within 4Å: Chain A: F.119, V.120 Ligand excluded by PLIP HEZ.14: 4 residues within 4Å: Chain A: A.19, P.22, F.111 Ligands: HEZ.15 Ligand excluded by PLIP HEZ.15: 5 residues within 4Å: Chain A: P.22, V.26, W.81, F.115 Ligands: HEZ.14 Ligand excluded by PLIP HEZ.16: 6 residues within 4Å: Chain A: P.10, C.13, A.14, G.17, L.104, G.107 Ligand excluded by PLIP HEZ.17: 4 residues within 4Å: Chain A: V.31, M.43, L.89 Ligands: HEZ.18 Ligand excluded by PLIP HEZ.18: 2 residues within 4Å: Chain A: V.40 Ligands: HEZ.17 Ligand excluded by PLIP HEZ.19: 4 residues within 4Å: Chain A: P.162, H.166, G.170, P.172 Ligand excluded by PLIP HEZ.20: 6 residues within 4Å: Chain A: P.61, G.62, Y.177, V.181, P.184, A.185 Ligand excluded by PLIP HEZ.21: 4 residues within 4Å: Chain A: I.45, A.48, F.49, T.52 Ligand excluded by PLIP HEZ.22: 2 residues within 4Å: Chain A: I.53, V.197 Ligand excluded by PLIP HEZ.23: 1 residues within 4Å: Chain A: I.201 Ligand excluded by PLIP

1 x NI: NICKEL (II) ION(Non-covalent)

NI.24: 5 residues within 4Å: Chain A: M.1, H.2, T.65, H.67, M.113 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.2, A:H.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Y. et al., Planar substrate-binding site dictates the specificity of ECF-type nickel/cobalt transporters. Cell Res. (2014)

Release Date

2014-03-26

Peptides

Cobalamin biosynthesis protein CbiM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Cobalamin biosynthesis protein CbiM

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