SMTL ID : 4m5e.1

Tse3 structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.280, V.281, V.282, T.285, Y.326, Y.376 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.280, A:V.282, A:T.285, A:Y.376 Water bridges: A:Y.326 GOL.2: 7 residues within 4Å: Chain A: N.102, W.103, N.153, D.156, T.212, L.213, P.215 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.102 Water bridges: A:N.153, A:S.211 GOL.3: 4 residues within 4Å: Chain A: Y.289, L.291, R.325, Y.329 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.325

1 x CD: CADMIUM ION(Non-covalent)

CD.4: 3 residues within 4Å: Chain A: D.18, Q.20, E.25 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.18, A:Q.20, A:E.25, H2O.1, H2O.1

4 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.5: 5 residues within 4Å: Chain A: E.375, S.378, R.379, D.382, N.384 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.378, A:R.379, A:D.382, A:N.384, H2O.1 CA.6: 5 residues within 4Å: Chain A: N.181, D.253, Q.254, E.258, Q.280 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.253, A:E.258, A:E.258, H2O.1, H2O.1 CA.7: 1 residues within 4Å: Chain A: D.117 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.117, H2O.2, H2O.3, H2O.5, H2O.11 CA.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, D. et al., Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism. Mol.Microbiol. (2014)

Release Date

2014-04-23

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein