SMTL ID : 4m5y.2 (1 other biounit)

Crystal structure of broadly neutralizing Fab 5J8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: V.2, Q.3, K.113, W.114 Chain B: A.42, P.43, V.44 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:V.2, A:W.114, B:P.43 Water bridges: A:V.2, B:A.42 PEG.2: 6 residues within 4Å: Chain A: N.32, Y.33, Y.34, Y.53, R.101, Y.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.32, A:Y.33, A:R.101, A:Y.109 PEG.3: 3 residues within 4Å: Chain A: E.1, G.26, Y.27 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.26 PEG.4: 6 residues within 4Å: Chain A: G.69, I.70, S.71, S.80, K.82 Ligands: PEG.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.71, A:S.80 Water bridges: A:S.80, A:L.81 PEG.5: 4 residues within 4Å: Chain A: I.17, K.82, S.84 Ligands: PEG.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.68 PEG.6: 5 residues within 4Å: Chain B: Q.36, V.79, G.80, E.82, N.172 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.36, B:Q.36, B:T.38, B:N.172 Water bridges: B:E.82 PEG.7: 6 residues within 4Å: Chain B: T.106, V.107, L.108, G.109, Q.110, Y.142 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.108, B:Q.110, B:Q.110 Water bridges: B:T.106, B:T.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, M. et al., Antibody Recognition of the Pandemic H1N1 Influenza Virus Hemagglutinin Receptor Binding Site. J.Virol. (2013)

Release Date

2013-09-25

Peptides

Fab 5J8 heavy chain: A
Fab 5J8 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
M

Fab 5J8 heavy chain

Fab 5J8 light chain

Related Entries With Identical Sequence