SMTL ID : 4m61.1 (1 other biounit)

Crystal structure of unliganded anti-DNA Fab A52

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.58, S.71, G.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.72 Water bridges: A:S.58, A:S.58, A:G.70, A:S.71 SO4.2: 3 residues within 4Å: Chain A: K.45, Q.48, K.51 7 PLIP interactions: 7 interactions with chain A Water bridges: A:K.45, A:Q.48, A:Q.48, A:Q.48, A:K.51 Salt bridges: A:K.45, A:K.51 SO4.3: 3 residues within 4Å: Chain A: R.160, R.193, H.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.160 Salt bridges: A:R.193, A:H.194 SO4.4: 2 residues within 4Å: Chain A: R.60, T.69 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.60 Salt bridges: A:R.60 SO4.5: 4 residues within 4Å: Chain B: A.9, T.115, E.155, S.156 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.115, B:E.155 Water bridges: B:A.9, B:T.115, B:S.156, B:V.157 SO4.6: 4 residues within 4Å: Chain B: V.72, D.73, K.74, S.75 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.72, B:D.73, B:K.74 Water bridges: B:S.75 Salt bridges: B:K.74 SO4.7: 2 residues within 4Å: Chain B: T.58, Y.60 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.58, B:L.70 SO4.8: 1 residues within 4Å: Chain B: S.28 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.30 SO4.9: 1 residues within 4Å: Chain B: T.199 4 PLIP interactions: 4 interactions with chain B Water bridges: B:T.199, B:T.199, B:T.201, B:T.201 SO4.10: 3 residues within 4Å: Chain B: S.59, Y.60, K.65 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.60, B:Y.60 Salt bridges: B:K.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stanfield, R.L. et al., Crystal structure determination of anti-DNA Fab A52. Proteins (2014)

Release Date

2013-08-28

Peptides

Fab A52 light chain: A
Fab A52 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fab A52 light chain

Fab A52 heavy chain

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