SMTL ID : 4m6g.1

Structure of the Mycobacterium tuberculosis peptidoglycan amidase Rv3717 in complex with L-Alanine-iso-D-Glutamine reaction product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.19, E.54, H.109 Ligands: ALA.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.19, A:E.54, A:E.54, A:H.109 ZN.2: 1 residues within 4Å: Chain A: H.55 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.55

1 x ALA: ALANINE(Non-covalent)

ALA.3: 7 residues within 4Å: Chain A: H.19, A.43, E.54, H.109, E.184 Ligands: ZN.1, ZGL.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.54, A:A.110

1 x ZGL: D-alpha-glutamine(Non-covalent)

ZGL.4: 11 residues within 4Å: Chain A: H.19, K.39, Q.42, A.43, V.90, H.109, D.169, L.170, A.171, G.172 Ligands: ALA.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.90 Hydrogen bonds: A:Q.42, A:A.43, A:A.171, A:G.172 Water bridges: A:H.19, A:Q.42 Salt bridges: A:K.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prigozhin, D.M. et al., Structural and Biochemical Analyses of Mycobacterium tuberculosis N-Acetylmuramyl-L-alanine Amidase Rv3717 Point to a Role in Peptidoglycan Fragment Recycling. J.Biol.Chem. (2013)

Release Date

2013-09-18

Peptides

Peptidoglycan Amidase Rv3717: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan Amidase Rv3717

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