- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x 56D: (3R)-2-oxo-3-phenylbutanoic acid(Non-covalent)
56D.2: 10 residues within 4Å:- Chain A: W.99, C.136, M.240, H.243, D.272, A.273, F.287, F.291, H.295
- Ligands: FE.3
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:M.240, A:A.273, A:F.287, A:F.291
- Hydrogen bonds: A:W.99
- Water bridges: A:E.244, A:E.244
- Salt bridges: A:H.295
56D.16: 11 residues within 4Å:- Chain B: W.99, I.132, C.136, M.240, H.243, D.272, A.273, F.287, F.291, H.295
- Ligands: FE.17
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:M.240, B:A.273, B:F.287, B:F.291
- Salt bridges: B:H.295
- 2 x FE: FE (III) ION(Non-covalent)
FE.3: 3 residues within 4Å:- Chain A: H.243, H.295
- Ligands: 56D.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.243, A:H.295, H2O.3, H2O.10
FE.17: 3 residues within 4Å:- Chain B: H.243, H.295
- Ligands: 56D.16
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.243, B:H.295, H2O.16, H2O.17
- 2 x HF2: (2R)-2-hydroxy-3-phenylpropanoic acid(Covalent)
HF2.4: 7 residues within 4Å:- Chain A: D.309, F.312, C.319, V.320, K.321, K.322, F.334
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.309
- Salt bridges: A:K.322
HF2.18: 7 residues within 4Å:- Chain B: D.309, F.312, C.319, V.320, K.321, K.322, F.334
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.309, B:D.309
- Water bridges: B:D.309
- Salt bridges: B:K.322
- 14 x CA: CALCIUM ION(Non-covalent)
CA.5: 1 residues within 4Å:- Chain A: R.12
No protein-ligand interaction detected (PLIP)CA.6: 3 residues within 4Å:- Chain A: K.44, L.45, D.46
No protein-ligand interaction detected (PLIP)CA.7: 2 residues within 4Å:- Chain A: R.75, P.85
No protein-ligand interaction detected (PLIP)CA.8: 3 residues within 4Å:- Chain A: R.110, F.124, Y.125
No protein-ligand interaction detected (PLIP)CA.9: 3 residues within 4Å:- Chain A: F.180, P.181, G.182
No protein-ligand interaction detected (PLIP)CA.10: 4 residues within 4Å:- Chain A: A.226, G.228, E.229, F.230
No protein-ligand interaction detected (PLIP)CA.11: 2 residues within 4Å:- Chain A: P.263, V.265
No protein-ligand interaction detected (PLIP)CA.12: 2 residues within 4Å:- Chain A: D.306, D.309
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.309, H2O.7
CA.13: 4 residues within 4Å:- Chain A: R.110, P.112, Q.113
- Chain B: Q.102
No protein-ligand interaction detected (PLIP)CA.19: 2 residues within 4Å:- Chain A: R.282
- Chain B: R.75
No protein-ligand interaction detected (PLIP)CA.20: 1 residues within 4Å:- Chain B: R.12
No protein-ligand interaction detected (PLIP)CA.21: 3 residues within 4Å:- Chain A: Q.102
- Chain B: P.112, Q.113
No protein-ligand interaction detected (PLIP)CA.22: 3 residues within 4Å:- Chain B: K.44, L.45, D.46
No protein-ligand interaction detected (PLIP)CA.23: 4 residues within 4Å:- Chain B: R.215, D.217, Q.223, V.224
No protein-ligand interaction detected (PLIP)- 1 x IOD: IODIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zou, X.W. et al., Structure and mechanism of a nonhaem-iron SAM-dependent C-methyltransferase and its engineering to a hydratase and an O-methyltransferase. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-06-25
- Peptides
- Methyltransferase MppJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x 56D: (3R)-2-oxo-3-phenylbutanoic acid(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x HF2: (2R)-2-hydroxy-3-phenylpropanoic acid(Covalent)
- 14 x CA: CALCIUM ION(Non-covalent)
- 1 x IOD: IODIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zou, X.W. et al., Structure and mechanism of a nonhaem-iron SAM-dependent C-methyltransferase and its engineering to a hydratase and an O-methyltransferase. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-06-25
- Peptides
- Methyltransferase MppJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B