SMTL ID : 4ma5.1

The crystal structure of phosphoribosylaminoimidazole carboxylase ATPase subunit of Francisella tularensis subsp. tularensis SCHU S4 in complex with an ATP analog, AMP-PNP.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 19 residues within 4Å: Chain A: R.98, I.136, K.138, Y.144, D.145, G.146, E.175, A.176, F.177, V.178, F.180, E.183, H.206, G.209, E.247, F.249, N.258, E.259, H.265 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.98, A:K.138, A:D.145, A:D.145, A:G.146, A:A.176, A:V.178, A:E.183, A:E.247, A:E.247, A:N.258 Water bridges: A:G.143, A:Y.144, A:I.211 ANP.6: 19 residues within 4Å: Chain B: R.98, I.136, K.138, Y.144, D.145, G.146, E.175, A.176, F.177, V.178, F.180, E.183, H.206, G.209, E.247, F.249, N.258, E.259, H.265 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:R.98, B:K.138, B:D.145, B:D.145, B:D.145, B:G.146, B:E.175, B:A.176, B:V.178, B:E.183, B:E.247, B:E.247, B:N.258, B:E.259 Water bridges: B:G.143, B:Y.144, B:I.211

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: L.121, Q.125 No protein-ligand interaction detected (PLIP) FMT.7: 2 residues within 4Å: Chain B: L.121, Q.125 No protein-ligand interaction detected (PLIP)

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: E.37, V.40 Ligands: NA.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.37, A:V.40 NA.4: 4 residues within 4Å: Chain A: S.95, E.101, E.259, I.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.259, A:E.259, A:I.260 NA.8: 3 residues within 4Å: Chain B: E.37, V.40 Ligands: NA.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.37, B:V.40 NA.9: 4 residues within 4Å: Chain B: S.95, E.101, E.259, I.260 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.95, B:I.260

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: K.322 Chain B: S.271, I.272, A.275, V.276, T.277, S.278, E.281 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:I.272, B:S.278, B:S.278, B:E.281, B:E.281 Water bridges: B:A.275 GOL.10: 8 residues within 4Å: Chain A: S.271, I.272, A.275, V.276, T.277, S.278, E.281 Chain B: K.322 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.272, A:S.278, A:S.278, A:E.281 Water bridges: A:A.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of phosphoribosylaminoimidazole carboxylase ATPase subunit of Francisella tularensis subsp. tularensis SCHU S4 in complex with an ATP analog, AMP-PNP. To be Published

Release Date

2013-08-28

Peptides

Phosphoribosylaminoimidazole carboxylase, ATPase subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphoribosylaminoimidazole carboxylase, ATPase subunit