SMTL ID : 4ma9.1

Wild type Salmonella Alkyl Hydroperoxide Reductase C in its substrate-ready conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-10-mer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: S.1, L.2, F.122, I.133 Chain B: S.1 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: S.1 Chain B: S.1, L.2, F.122, I.133 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain C: S.1, L.2, F.122, I.133 Chain D: S.1 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain C: S.1 Chain D: S.1, L.2, F.122, I.133 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain E: S.1, L.2, F.122, I.133 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain F: S.1, L.2, F.122, I.133 Chain G: S.1 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain F: S.1 Chain G: S.1, L.2, F.122, I.133 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain H: S.1, L.2, F.122, I.133 Chain I: S.1 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain H: S.1 Chain I: S.1, L.2, F.122, I.133 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain J: S.1, L.2, F.122, I.133 Ligand excluded by PLIP

6 x K: POTASSIUM ION(Non-covalent)

K.2: 7 residues within 4Å: Chain A: T.72, D.73, P.99 Chain F: T.72, D.73, P.99 Ligands: K.14 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: F:T.72, A:T.72, H2O.1, H2O.21 K.5: 6 residues within 4Å: Chain B: T.72, D.73, P.99 Chain C: T.72, D.73, P.99 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: C:T.72, B:T.72, H2O.6, H2O.11 K.10: 6 residues within 4Å: Chain D: T.72, D.73, P.99 Chain E: T.72, D.73, P.99 4 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: E:T.72, D:T.72, H2O.17, H2O.18 K.14: 7 residues within 4Å: Chain A: T.72, D.73, P.99 Chain F: T.72, D.73, P.99 Ligands: K.2 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: F:T.72, A:T.72, H2O.1, H2O.21 K.17: 6 residues within 4Å: Chain G: T.72, D.73, P.99 Chain H: T.72, D.73, P.99 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: G:T.72, H:T.72, H2O.25, H2O.30 K.22: 6 residues within 4Å: Chain I: T.72, D.73, P.99 Chain J: T.72, D.73, P.99 4 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: J:T.72, I:T.72, H2O.36, H2O.38

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 10 residues within 4Å: Chain A: P.39, A.40, T.43, F.44, R.111, L.116, R.119, E.138 Chain B: P.178 Chain F: F.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.111, A:E.138 Water bridges: A:R.119 GOL.6: 4 residues within 4Å: Chain B: E.59, K.62, L.63, K.152 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.59, B:E.59, B:K.62, B:K.152 GOL.8: 10 residues within 4Å: Chain B: F.76 Chain C: P.39, A.40, T.43, F.44, R.111, E.114, L.116, R.119, E.138 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.111, C:E.114, C:E.138 Water bridges: C:R.119 GOL.11: 5 residues within 4Å: Chain D: R.31, Q.61, K.62, G.64, V.65 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.31, D:R.31, D:Q.61, D:K.62, D:G.64 GOL.15: 10 residues within 4Å: Chain A: F.76 Chain F: P.39, A.40, T.43, F.44, R.111, L.116, R.119, E.138 Chain G: P.178 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:R.111, F:E.138 Water bridges: F:R.119 GOL.18: 4 residues within 4Å: Chain G: E.59, K.62, L.63, K.152 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:E.59, G:K.62, G:K.152 GOL.20: 10 residues within 4Å: Chain G: F.76 Chain H: P.39, A.40, T.43, F.44, R.111, E.114, L.116, R.119, E.138 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:R.111, H:E.114, H:E.138 Water bridges: H:R.119 GOL.23: 5 residues within 4Å: Chain I: R.31, Q.61, K.62, G.64, V.65 5 PLIP interactions: 5 interactions with chain I Hydrogen bonds: I:R.31, I:R.31, I:Q.61, I:K.62, I:G.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perkins, A. et al., The sensitive balance between the fully folded and locally unfolded conformations of a model peroxiredoxin. Biochemistry (2013)

Release Date

2013-11-20

Peptides

Alkyl hydroperoxide reductase subunit C: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Alkyl hydroperoxide reductase subunit C

Related Entries With Identical Sequence