SMTL ID : 4mbo.2 (1 other biounit)

1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from Streptococcus agalactiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain A: D.66, T.99 Chain B: E.153 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.99, H2O.1, H2O.3, H2O.5, H2O.13 CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain A: S.40 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.40, H2O.3, H2O.11, H2O.15, H2O.15 CA.7: 3 residues within 4Å: Chain A: E.153 Chain B: D.66, T.99 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.99, H2O.18, H2O.20, H2O.22, H2O.30 CA.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain B: S.40 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:S.40, H2O.20, H2O.28, H2O.32, H2O.32

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 10 residues within 4Å: Chain A: C.140, F.141, T.142, S.151 Chain B: K.63, L.64, S.65, T.142, A.143, T.144 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.142, B:T.142, B:T.144 BME.11: 10 residues within 4Å: Chain A: K.63, L.64, S.65, T.142, A.143, T.144 Chain B: C.140, F.141, T.142, S.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.142, A:T.142, A:T.144

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 7 residues within 4Å: Chain A: T.164, S.302, Q.306, Y.308, G.309, S.310, K.311 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.164 MES.12: 7 residues within 4Å: Chain B: T.164, S.302, Q.306, Y.308, G.309, S.310, K.311 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seo, H.S. et al., Characterization of Fibrinogen Binding by Glycoproteins Srr1 and Srr2 of Streptococcus agalactiae. J.Biol.Chem. (2013)

Release Date

2013-11-06

Peptides

Serine-rich Repeat Adhesion Glycoprotein (Srr1): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Serine-rich Repeat Adhesion Glycoprotein (Srr1)

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