SMTL ID : 4mbs.1 (1 other biounit)

Crystal Structure of the CCR5 Chemokine Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

monomer

Ligands

1 x MRV: 4,4-difluoro-N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]oct-8-yl}-1-phenylpropyl]cyclohexanecarboxamide(Non-covalent)

MRV.1: 19 residues within 4Å: Chain A: Y.39, W.88, Y.91, Y.110, F.111, F.114, F.184, K.193, Q.196, T.197, I.200, W.301, Y.304, L.308, T.312, M.332, E.336, T.337, M.340 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.88, A:W.88, A:Y.91, A:Q.196, A:I.200, A:W.301, A:Y.304 Hydrogen bonds: A:Y.39, A:Y.304 Salt bridges: A:E.336 pi-Stacking: A:W.88, A:Y.110, A:F.111, A:F.114 Halogen bonds: A:T.312

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.231, C.234, C.264, C.267 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.231, A:C.234, A:C.264, A:C.267

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 4 residues within 4Å: Chain A: V.157, F.160, A.161, L.203 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.157, A:L.203 OLC.4: 5 residues within 4Å: Chain A: P.86, F.87, H.90, F.98 Ligands: OLC.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.86 Water bridges: A:D.97 OLC.5: 6 residues within 4Å: Chain A: S.40, F.43, I.44, P.86, H.90 Ligands: OLC.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.43, A:I.44 Hydrogen bonds: A:H.90 OLC.6: 7 residues within 4Å: Chain A: N.73, F.80, T.101, Q.104, L.105, W.155, I.166 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.80, A:W.155, A:W.155 Hydrogen bonds: A:Q.104 Water bridges: A:N.100, A:T.101 OLC.7: 9 residues within 4Å: Chain A: L.34, L.35, L.38, V.334, T.337, L.338, T.341, I.345, I.348 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.38, A:T.341, A:I.345, A:I.348 Hydrogen bonds: A:T.337, A:T.337 OLC.8: 5 residues within 4Å: Chain A: Y.216, L.223, V.287, R.288, F.291 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.216, A:F.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, Q. et al., Structure of the CCR5 chemokine receptor-HIV entry inhibitor maraviroc complex. Science (2013)

Release Date

2013-09-11

Peptides

Chimera protein of C-C chemokine receptor type 5 and Rubredoxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Chimera protein of C-C chemokine receptor type 5 and Rubredoxin

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