SMTL ID : 4mcc.1

HinTrmD in complex with N-[4-(AMINOMETHYL)BENZYL]-4-OXO-3,4-DIHYDROTHIENO[2,3-D]PYRIMIDINE-5-CARBOXAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x 21X: N-[4-(aminomethyl)benzyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide(Non-covalent)

21X.1: 17 residues within 4Å: Chain A: L.87, S.88, P.89, G.113, Y.115, E.116, W.131, S.132, I.133, G.134, Y.136, V.137, L.138, G.140, G.141, P.144 Chain B: D.177 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.89, A:V.137 Hydrogen bonds: A:E.116, A:I.133, A:Y.136, A:L.138, A:L.138 Water bridges: A:S.132 21X.2: 16 residues within 4Å: Chain B: L.87, S.88, P.89, G.113, Y.115, E.116, W.131, S.132, I.133, G.134, Y.136, V.137, L.138, G.140, G.141, P.144 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.89, B:P.89, B:V.137 Hydrogen bonds: B:E.116, B:I.133, B:Y.136, B:L.138, B:L.138 Water bridges: B:S.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hill, P.J. et al., Selective Inhibitors of Bacterial t-RNA-(N(1)G37) Methyltransferase (TrmD) That Demonstrate Novel Ordering of the Lid Domain. J.Med.Chem. (2013)

Release Date

2013-09-04

Peptides

tRNA (guanine-N(1)-)-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

tRNA (guanine-N(1)-)-methyltransferase

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