SMTL ID : 4mdb.1

Structure of Mos1 transposase catalytic domain and Raltegravir with Mg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x RLT: N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide(Non-covalent)

RLT.1: 9 residues within 4Å: Chain A: D.36, D.129, N.130, A.131, A.155, Y.156, D.164 Ligands: MG.2, MG.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.130, A:A.155, A:Y.156 Hydrogen bonds: A:Y.156 Water bridges: A:E.37, A:D.129, A:D.164 pi-Stacking: A:Y.156

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.36, D.164 Ligands: RLT.1, MG.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.36, A:D.164, A:D.164, H2O.2 MG.3: 5 residues within 4Å: Chain A: D.36, E.37, D.129 Ligands: RLT.1, MG.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.36, A:D.129, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolkowicz, U.M. et al., Structural Basis of Mos1 Transposase Inhibition by the Anti-retroviral Drug Raltegravir. Acs Chem.Biol. (2014)

Release Date

2014-01-22

Peptides

Mariner Mos1 transposase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mariner Mos1 transposase

Related Entries With Identical Sequence