SMTL ID : 4mdn.1

Structure of a novel submicromolar MDM2 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x Y30: 3-{(1S)-2-(tert-butylamino)-1-[{4-[(4-chlorobenzyl)oxy]benzyl}(formyl)amino]-2-oxoethyl}-6-chloro-1H-indole-2-carboxylic acid(Non-covalent)

Y30.1: 15 residues within 4Å: Chain A: I.3, E.7, Q.8, M.34, L.38, F.39, L.41, G.42, I.45, M.46, F.70, V.77, H.80, I.83, Y.84 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.3, A:Q.8, A:L.38, A:L.38, A:L.41, A:I.45, A:V.77, A:I.83, A:Y.84 Hydrogen bonds: A:L.38, A:G.42 Water bridges: A:G.42 Halogen bonds: A:E.7

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: M.1, Q.2, H.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.2, A:Q.2 Water bridges: A:I.3 Salt bridges: A:H.80 SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bista, M. et al., Transient Protein States in Designing Inhibitors of the MDM2-p53 Interaction. Structure (2013)

Release Date

2013-11-13

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2