SMTL ID : 4mdx.1

Crystal structure of Bacillus subtilis MazF in complex with RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

1 x U- U- DU- A- C- A- U- A- A: RNA, mRNA(Non-covalent)

U-U-DU-A-C-A-U-A-A.1: 35 residues within 4Å: Chain A: Q.32, N.33, I.35, G.36, F.39, S.40, P.41, T.42 Chain B: F.11, G.19, S.20, E.21, Q.22, G.23, V.25, R.26, P.27, I.48, T.49, A.50, Q.51, Q.53, K.54, L.57, P.58, T.59, H.60, F.70, E.71, R.72, S.74, E.79, Q.80, D.91 Ligands: IOD.8 Protein-ligand interaction information (PLIP) not available

6 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: D.97, D.98 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: E.71 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: D.34 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain B: D.97, D.98 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain B: D.34 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain B: G.23, G.24 Ligands: U-U-DU-A-C-A-U-A-A.1 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: Q.87, L.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simanshu, D.K. et al., Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis. Mol.Cell (2013)

Release Date

2013-10-23

Peptides

mRNA interferase EndoA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mRNA interferase EndoA