SMTL ID : 4met.1 (1 other biounit)

Assigning the EPR Fine Structure Parameters of the Mn(II) Centers in Bacillus subtilis Oxalate Decarboxylase by Site-Directed Mutagenesis and DFT/MM Calculations

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

12 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.95, H.97, E.101, H.140 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.95, A:H.97, A:E.101, A:H.140, H2O.4 CO.2: 5 residues within 4Å: Chain A: H.273, H.275, E.280, H.319, E.333 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.273, A:H.275, A:E.280, A:H.319, H2O.3, H2O.4 CO.3: 4 residues within 4Å: Chain B: H.95, H.97, E.101, H.140 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.95, B:H.97, B:E.101, B:H.140, H2O.8 CO.4: 5 residues within 4Å: Chain B: H.273, H.275, E.280, H.319, E.333 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.273, B:H.275, B:E.280, B:H.319, H2O.8, H2O.9 CO.5: 4 residues within 4Å: Chain C: H.95, H.97, E.101, H.140 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.95, C:H.97, C:E.101, C:H.140, H2O.12 CO.6: 5 residues within 4Å: Chain C: H.273, H.275, E.280, H.319, E.333 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.273, C:H.275, C:E.280, C:H.319, H2O.11, H2O.12 CO.7: 4 residues within 4Å: Chain D: H.95, H.97, E.101, H.140 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.95, D:H.97, D:E.101, D:H.140, H2O.16 CO.8: 5 residues within 4Å: Chain D: H.273, H.275, E.280, H.319, E.333 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.273, D:H.275, D:E.280, D:H.319, H2O.16, H2O.17 CO.9: 4 residues within 4Å: Chain E: H.95, H.97, E.101, H.140 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.95, E:H.97, E:E.101, E:H.140, H2O.20 CO.10: 5 residues within 4Å: Chain E: H.273, H.275, E.280, H.319, E.333 6 PLIP interactions: 4 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.273, E:H.275, E:E.280, E:H.319, H2O.19, H2O.20 CO.11: 4 residues within 4Å: Chain F: H.95, H.97, E.101, H.140 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.95, F:H.97, F:E.101, F:H.140, H2O.24 CO.12: 5 residues within 4Å: Chain F: H.273, H.275, E.280, H.319, E.333 6 PLIP interactions: 4 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.273, F:H.275, F:E.280, F:H.319, H2O.25, H2O.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campomanes, P. et al., Assigning the EPR Fine Structure Parameters of the Mn(II) Centers in Bacillus subtilis Oxalate Decarboxylase by Site-Directed Mutagenesis and DFT/MM Calculations. J.Am.Chem.Soc. (2014)

Release Date

2014-03-05

Peptides

Oxalate decarboxylase OxdC: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Oxalate decarboxylase OxdC

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