SMTL ID : 4mfr.1

Crystal structure of Mycobacterium tuberculosis CarD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

32 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: Q.72, R.75, H.168 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: G.99, V.101, E.138 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: M.127 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.47 Chain B: R.113 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: S.86 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: V.5, G.6 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain B: H.170 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: P.82 Ligands: SO4.28 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: K.69, Q.72, V.73 Ligand excluded by PLIP IOD.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: G.57, L.141 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Chain A: R.126 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: K.38, Q.41 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain A: R.126 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain A: K.32, E.33 Ligand excluded by PLIP IOD.31: 3 residues within 4Å: Chain B: Q.72, R.75, H.168 Ligand excluded by PLIP IOD.32: 3 residues within 4Å: Chain B: G.99, V.101, E.138 Ligand excluded by PLIP IOD.33: 1 residues within 4Å: Chain B: M.127 Ligand excluded by PLIP IOD.34: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.35: 2 residues within 4Å: Chain A: R.113 Chain B: R.47 Ligand excluded by PLIP IOD.36: 1 residues within 4Å: Chain B: S.86 Ligand excluded by PLIP IOD.37: 2 residues within 4Å: Chain B: V.5, G.6 Ligand excluded by PLIP IOD.38: 1 residues within 4Å: Chain A: H.170 Ligand excluded by PLIP IOD.39: 2 residues within 4Å: Chain B: P.82 Ligands: SO4.58 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain B: K.69, Q.72, V.73 Ligand excluded by PLIP IOD.41: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.42: 2 residues within 4Å: Chain B: G.57, L.141 Ligand excluded by PLIP IOD.43: 1 residues within 4Å: Chain B: R.126 Ligand excluded by PLIP IOD.44: 2 residues within 4Å: Chain B: K.38, Q.41 Ligand excluded by PLIP IOD.45: 1 residues within 4Å: Chain B: R.126 Ligand excluded by PLIP IOD.46: 2 residues within 4Å: Chain B: K.32, E.33 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.17: 4 residues within 4Å: Chain A: R.59, D.60, V.61, A.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.60, A:V.61, A:A.142 GOL.47: 4 residues within 4Å: Chain B: R.59, D.60, V.61, A.142 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.60, B:V.61, B:A.142

26 x SO4: SULFATE ION(Non-functional Binders)

SO4.18: 3 residues within 4Å: Chain A: E.65, G.66, K.69 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain A: H.168, H.169, H.170 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain A: D.60, V.61 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain A: A.76, P.77, H.78 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain A: I.22, E.33, L.35, A.50 Chain B: I.2, F.3 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain A: N.84, S.86, R.87 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain A: T.83, N.84, W.85, R.88 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain A: Q.133, V.136, E.151, D.155 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain A: K.130, Q.133, I.134 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain A: W.112, K.125, L.128, A.129, R.132 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain A: E.81, T.83, R.87 Ligands: IOD.9 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain A: H.14, E.156, V.157, A.160 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain A: K.4, V.5 Chain B: I.22 Ligand excluded by PLIP SO4.48: 3 residues within 4Å: Chain B: E.65, G.66, K.69 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain B: H.168, H.169, H.170 Ligand excluded by PLIP SO4.50: 2 residues within 4Å: Chain B: D.60, V.61 Ligand excluded by PLIP SO4.51: 3 residues within 4Å: Chain B: A.76, P.77, H.78 Ligand excluded by PLIP SO4.52: 6 residues within 4Å: Chain A: I.2, F.3 Chain B: I.22, E.33, L.35, A.50 Ligand excluded by PLIP SO4.53: 3 residues within 4Å: Chain B: N.84, S.86, R.87 Ligand excluded by PLIP SO4.54: 4 residues within 4Å: Chain B: T.83, N.84, W.85, R.88 Ligand excluded by PLIP SO4.55: 4 residues within 4Å: Chain B: Q.133, V.136, E.151, D.155 Ligand excluded by PLIP SO4.56: 3 residues within 4Å: Chain B: K.130, Q.133, I.134 Ligand excluded by PLIP SO4.57: 5 residues within 4Å: Chain B: W.112, K.125, L.128, A.129, R.132 Ligand excluded by PLIP SO4.58: 4 residues within 4Å: Chain B: E.81, T.83, R.87 Ligands: IOD.39 Ligand excluded by PLIP SO4.59: 4 residues within 4Å: Chain B: H.14, E.156, V.157, A.160 Ligand excluded by PLIP SO4.60: 3 residues within 4Å: Chain A: I.22 Chain B: K.4, V.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaur, G. et al., Crystal structure of Mycobacterium tuberculosis CarD, an essential RNA polymerase binding protein, reveals a quasidomain-swapped dimeric structural architecture. Proteins (2014)

Release Date

2013-11-06

Peptides

RNA polymerase-binding transcription factor CarD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RNA polymerase-binding transcription factor CarD

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