SMTL ID : 4mh2.1

Crystal structure of Bovine Mitochondrial Peroxiredoxin III

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-12-mer

Ligands

6 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 12 residues within 4Å: Chain A: H.161, S.163, R.171, E.175, L.179 Chain B: L.150, H.161, S.163, R.171, E.175, T.176, L.179 16 PLIP interactions: 7 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:E.175, B:L.179 Hydrogen bonds: A:S.163, A:S.163, A:S.172, A:E.175, B:S.163, B:N.165, B:S.172, B:E.175, B:E.175 Salt bridges: A:H.161, A:R.171, B:H.161, B:H.161, B:R.171 CIT.2: 15 residues within 4Å: Chain C: H.161, S.163, N.165, R.171, S.172, E.175, T.176, L.179 Chain D: H.161, S.163, R.171, S.172, E.175, T.176, L.179 17 PLIP interactions: 10 interactions with chain C, 7 interactions with chain D Hydrophobic interactions: C:E.175, C:L.179, D:E.175 Hydrogen bonds: C:S.163, C:S.163, C:N.165, C:S.172, D:S.163, D:S.163, D:S.172, D:E.175 Water bridges: C:E.175 Salt bridges: C:H.161, C:R.171, C:R.171, D:H.161, D:H.161 CIT.3: 15 residues within 4Å: Chain E: H.161, S.163, N.165, R.171, S.172, E.175, T.176, L.179 Chain F: H.161, S.163, R.171, S.172, E.175, T.176, L.179 14 PLIP interactions: 6 interactions with chain E, 8 interactions with chain F Hydrophobic interactions: E:L.179, F:E.175 Hydrogen bonds: E:S.163, E:N.165, E:S.172, F:S.163, F:S.163, F:S.172, F:E.175, F:T.176 Salt bridges: E:H.161, E:R.171, F:H.161, F:H.161 CIT.4: 13 residues within 4Å: Chain G: H.161, S.163, N.165, R.171, S.172, E.175, T.176, L.179 Chain H: H.161, S.163, R.171, E.175, T.176 16 PLIP interactions: 7 interactions with chain H, 9 interactions with chain G Hydrophobic interactions: H:E.175, G:E.175, G:L.179 Hydrogen bonds: H:S.163, H:S.163, G:S.163, G:N.165, G:S.172, G:S.172 Water bridges: H:R.171 Salt bridges: H:H.161, H:H.161, H:R.171, G:H.161, G:R.171, G:R.171 CIT.5: 15 residues within 4Å: Chain I: L.150, H.161, S.163, N.165, R.171, S.172, E.175, T.176, L.179 Chain J: H.161, S.163, S.172, E.175, T.176, L.179 16 PLIP interactions: 6 interactions with chain J, 10 interactions with chain I Hydrophobic interactions: J:E.175, I:E.175, I:L.179 Hydrogen bonds: J:S.163, J:S.163, I:S.163, I:N.165, I:S.172, I:S.172, I:E.175 Salt bridges: J:H.161, J:H.161, J:R.171, I:H.161, I:R.171, I:R.171 CIT.6: 12 residues within 4Å: Chain K: H.161, R.171, E.175, L.179 Chain L: H.161, S.163, N.165, R.171, S.172, E.175, T.176, L.179 14 PLIP interactions: 10 interactions with chain L, 4 interactions with chain K Hydrogen bonds: L:S.163, L:S.163, L:S.163, L:N.165, L:S.172, L:E.175, K:N.165 Salt bridges: L:H.161, L:H.161, L:R.171, L:R.171, K:H.161, K:R.171 Water bridges: K:S.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Z. et al., Improved Catenated Structures of Bovine Peroxiredoxin III F190L Reveal Details of Ring-Ring Interactions and a Novel Conformational State. Plos One (2015)

Release Date

2015-03-04

Peptides

Thioredoxin-dependent peroxide reductase, mitochondrial: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Thioredoxin-dependent peroxide reductase, mitochondrial

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