SMTL ID : 4mhi.3 (2 other biounits)

Crystal structure of a H5N1 influenza virus hemagglutinin from A/goose/Guangdong/1/96

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.169, N.240, D.241, A.242 Chain E: P.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.240 NAG-NAG.3: 5 residues within 4Å: Chain F: E.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:E.147, F:E.147

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-MAN.2: 4 residues within 4Å: Chain C: P.221 Chain E: N.169, N.240, A.242 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: Q.19, N.27 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain A: N.290 No protein-ligand interaction detected (PLIP) NAG.6: 4 residues within 4Å: Chain A: P.221 Chain C: N.169, N.240, A.242 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:P.221 Hydrogen bonds: C:N.169, C:N.240 NAG.7: 2 residues within 4Å: Chain C: Q.19, N.27 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.19, C:N.27 NAG.8: 1 residues within 4Å: Chain E: N.27 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., A Unique and Conserved Neutralization Epitope in H5N1 Influenza Viruses Identified by an Antibody against the A/Goose/Guangdong/1/96 Hemagglutinin. J.Virol. (2013)

Release Date

2013-10-02

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

C
O

E
Q

B
N

D
P

F
R

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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