SMTL ID : 4mho.1

Crystal structure of Gpb in complex with S3, SUGAR (N-[(BIPHENYL-4-YLOXY)ACETYL]-BETA-D-GLUCOPYRANOSYLAMINE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 26M: N-[(biphenyl-4-yloxy)acetyl]-beta-D-glucopyranosylamine(Non-covalent)

26M.1: 21 residues within 4Å: Chain A: E.77, N.122, G.124, L.125, L.128, Y.269, N.271, D.272, F.275, R.281, H.330, H.366, E.374, V.444, N.473, Y.562, E.661, A.662, S.663, G.664, T.665 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.269, A:D.272, A:F.275 Hydrogen bonds: A:G.124, A:L.125, A:N.473, A:E.661, A:A.662, A:S.663, A:G.664 Water bridges: A:G.126, A:H.366, A:T.665 pi-Cation interactions: A:R.281, A:H.330 26M.2: 21 residues within 4Å: Chain B: E.77, N.122, G.124, L.125, L.128, Y.269, N.271, D.272, F.275, R.281, H.330, H.366, E.374, V.444, N.473, Y.562, E.661, A.662, S.663, G.664, T.665 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Y.269, B:D.272, B:F.275 Hydrogen bonds: B:G.124, B:L.125, B:H.366, B:N.473, B:Y.562, B:A.662, B:S.663, B:G.664 Water bridges: B:G.126, B:D.272, B:H.366, B:T.665 pi-Cation interactions: B:R.281, B:H.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parmenopoulou, V. et al., Structure based inhibitor design targeting glycogen phosphorylase b. Virtual screening, synthesis, biochemical and biological assessment of novel N-acyl-beta-d-glucopyranosylamines. Bioorg.Med.Chem. (2014)

Release Date

2014-07-23

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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