SMTL ID : 4mhw.1 (1 other biounit)

Crystal structure of ThiT with small molecule BAT-25

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 0YN: 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethanol(Non-covalent)

0YN.1: 13 residues within 4Å: Chain A: W.44, I.46, E.48, E.94, Y.95, Y.132, H.135, A.138, G.139, W.143, Y.156, V.160, N.161 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.44, A:Y.95, A:W.143, A:W.143, A:Y.156, A:V.160 Hydrogen bonds: A:H.135, A:H.135, A:N.161 pi-Stacking: A:W.44, A:H.135, A:W.143

1 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.2: 1 residues within 4Å: Chain A: I.163 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.163

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.3: 7 residues within 4Å: Chain A: I.104, L.107, F.108, V.126, L.129, L.130, F.133 No protein-ligand interaction detected (PLIP) P6G.4: 6 residues within 4Å: Chain A: F.125, L.129, L.158, G.162, I.163, I.166 No protein-ligand interaction detected (PLIP)

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 3 residues within 4Å: Chain A: P.38, T.40 Ligands: PG4.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.38, A:T.40

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: L.129, Y.132, F.136, L.158, N.161, G.162 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.161 PEG.7: 3 residues within 4Å: Chain A: L.67, V.100, S.101 No protein-ligand interaction detected (PLIP) PEG.8: 3 residues within 4Å: Chain A: L.67, L.71, V.100 No protein-ligand interaction detected (PLIP) PEG.9: 3 residues within 4Å: Chain A: F.16, N.17, V.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.17, A:N.17 PEG.10: 1 residues within 4Å: Chain A: I.177 No protein-ligand interaction detected (PLIP) PEG.11: 4 residues within 4Å: Chain A: V.47, L.167, I.170 Ligands: PG4.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.167

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.12: 3 residues within 4Å: Chain A: A.29, F.32, I.33 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.32

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.13: 4 residues within 4Å: Chain A: L.20, L.21, I.24, T.64 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.64

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.14: 6 residues within 4Å: Chain A: M.78, I.85, L.86, L.88, L.96 Ligands: PG4.15 No protein-ligand interaction detected (PLIP) PG4.15: 3 residues within 4Å: Chain A: M.78, I.79 Ligands: PG4.14 No protein-ligand interaction detected (PLIP) PG4.16: 7 residues within 4Å: Chain A: P.38, N.39, T.40, V.41, V.47 Ligands: 1PE.5, PEG.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swier, L.J.Y.M. et al., Crystal structure of ThiT with small molecules modulators. To be Published

Release Date

2014-09-03

Peptides

Thiamine transporter ThiT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Thiamine transporter ThiT

Related Entries With Identical Sequence