SMTL ID : 4mi3.1

Crystal structure of Gpb in complex with SUGAR (N-{(2R)-2-METHYL-3-[4-(PROPAN-2-YL)PHENYL]PROPANOYL}-BETA-D-GLUCOPYRANOSYLAMINE) (S21)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x 26R: N-{(2R)-2-methyl-3-[4-(propan-2-yl)phenyl]propanoyl}-beta-D-glucopyranosylamine(Non-covalent)

26R.1: 19 residues within 4Å: Chain A: G.124, L.125, L.128, Y.269, N.271, D.272, F.274, D.328, H.330, H.366, A.372, V.444, N.473, Y.562, E.661, A.662, S.663, G.664, T.665 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.125, A:Y.269, A:A.372 Hydrogen bonds: A:L.125, A:H.366, A:H.366, A:N.473, A:E.661, A:S.663, A:G.664 Water bridges: A:G.124, A:G.126, A:A.662, A:A.662, A:T.665 26R.2: 19 residues within 4Å: Chain B: G.124, L.125, L.128, Y.269, N.271, D.272, F.274, D.328, H.330, H.366, A.372, V.444, N.473, Y.562, E.661, A.662, S.663, G.664, T.665 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.125, B:Y.269, B:A.372 Hydrogen bonds: B:L.125, B:H.366, B:H.366, B:H.366, B:N.473, B:Y.562, B:S.663, B:G.664 Water bridges: B:G.124, B:G.126, B:A.662, B:A.662, B:T.665

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parmenopoulou, V. et al., Structure based inhibitor design targeting glycogen phosphorylase b. Virtual screening, synthesis, biochemical and biological assessment of novel N-acyl-beta-d-glucopyranosylamines. Bioorg.Med.Chem. (2014)

Release Date

2014-07-23

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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