SMTL ID : 4mi8.3 (2 other biounits)

Crystal structure of the complex of murine gamma-herpesvirus 68 Bcl-2 homolog M11 and a Beclin 1 BH3 domain-derived peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-oligomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.57, R.58, A.59 Chain B: R.11 Chain H: R.11 Ligands: SO4.8 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain H, 1 interactions with chain B Hydrogen bonds: A:R.58, A:A.59 Salt bridges: H:R.11, B:R.11 SO4.2: 2 residues within 4Å: Chain A: H.4, K.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.5 Salt bridges: A:H.4 SO4.3: 3 residues within 4Å: Chain A: N.128, N.131, H.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.128, A:N.131 Salt bridges: A:H.132 SO4.4: 6 residues within 4Å: Chain C: Y.57, R.58, A.59 Chain D: R.11 Chain F: R.11 Ligands: SO4.7 4 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C, 1 interactions with chain F Salt bridges: D:R.11, F:R.11 Hydrogen bonds: C:R.58, C:A.59 SO4.5: 2 residues within 4Å: Chain C: H.4, K.5 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.5 Salt bridges: C:H.4 SO4.6: 3 residues within 4Å: Chain C: N.128, N.131, H.132 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.128, C:N.131 Salt bridges: C:H.132 SO4.7: 6 residues within 4Å: Chain D: R.11 Chain E: Y.57, R.58, A.59 Chain F: R.11 Ligands: SO4.4 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E, 1 interactions with chain F Water bridges: D:R.11 Salt bridges: D:R.11, F:R.11 Hydrogen bonds: E:R.58, E:A.59 SO4.8: 6 residues within 4Å: Chain B: R.11 Chain G: Y.57, R.58, A.59 Chain H: R.11 Ligands: SO4.1 5 PLIP interactions: 2 interactions with chain G, 1 interactions with chain H, 2 interactions with chain B Hydrogen bonds: G:R.58, G:A.59 Salt bridges: H:R.11, B:R.11 Water bridges: B:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, M. et al., Targeting gamma-herpesvirus 68 Bcl-2-mediated down-regulation of autophagy. J.Biol.Chem. (2014)

Release Date

2014-01-29

Peptides

Bcl-2 homolog (Gene 16?): ACEG
Beclin-1: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

E
A

G
A

B
D

D
D

F
C

H
C

Bcl-2 homolog (Gene 16?)

Beclin-1

Related Entries With Identical Sequence