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SMTL ID : 4mi9.1
Crystal structure of Gpb in complex with SUGAR (N-[(3R)-3-(4-ETHYLPHENYL)BUTANOYL]-BETA-D-GLUCOPYRANOSYLAMINE) (S20)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
homo-dimer
Ligands
2 x
26W
:
N-[(3R)-3-(4-ethylphenyl)butanoyl]-beta-D-glucopyranosylamine
(Non-covalent)
26W.1:
20 residues within 4Å:
Chain A:
G.124
,
L.125
,
L.128
,
N.271
,
D.272
,
N.273
,
F.274
,
F.275
,
D.328
,
H.330
,
H.366
,
A.372
,
V.444
,
N.473
,
Y.562
,
E.661
,
A.662
,
S.663
,
G.664
,
T.665
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:L.125
,
A:H.366
Hydrogen bonds:
A:G.124
,
A:L.125
,
A:N.273
,
A:H.366
,
A:N.473
,
A:N.473
,
A:Y.562
,
A:E.661
,
A:A.662
,
A:S.663
,
A:G.664
Water bridges:
A:G.126
,
A:T.665
pi-Stacking:
A:H.330
26W.2:
20 residues within 4Å:
Chain B:
G.124
,
L.125
,
L.128
,
N.271
,
D.272
,
N.273
,
F.274
,
F.275
,
D.328
,
H.330
,
H.366
,
A.372
,
V.444
,
N.473
,
Y.562
,
E.661
,
A.662
,
S.663
,
G.664
,
T.665
18
PLIP interactions
:
18 interactions with chain B
Hydrophobic interactions:
B:L.125
,
B:H.366
Hydrogen bonds:
B:G.124
,
B:L.125
,
B:N.273
,
B:H.366
,
B:H.366
,
B:N.473
,
B:N.473
,
B:A.662
,
B:S.663
,
B:G.664
Water bridges:
B:G.126
,
B:D.272
,
B:D.272
,
B:Y.562
,
B:T.665
pi-Stacking:
B:H.330
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Parmenopoulou, V. et al., Structure based inhibitor design targeting glycogen phosphorylase b. Virtual screening, synthesis, biochemical and biological assessment of novel N-acyl-beta-d-glucopyranosylamines. Bioorg.Med.Chem. (2014)
Release Date
2014-07-23
Peptides
Glycogen phosphorylase, muscle form:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Glycogen phosphorylase, muscle form
Toggle Identical (AB)
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