SMTL ID : 4mif.1

Pyranose 2-oxidase from Phanerochaete chrysosporium, wild type from natural source

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Covalent)

FDA.1: 35 residues within 4Å: Chain A: G.20, G.22, P.23, I.24, V.42, E.43, I.44, I.96, L.100, T.149, R.150, G.151, G.154, M.155, S.156, H.158, W.159, T.160, C.161, A.162, H.281, R.282, C.283, A.331, C.332, G.333, A.336, V.340, L.552, H.553, G.585, N.586, N.596, P.597, T.598 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:I.96, A:L.100, A:W.159, A:L.552 Hydrogen bonds: A:G.22, A:I.24, A:I.44, A:T.149, A:G.151, A:G.153, A:G.154, A:M.155, A:M.155, A:T.160, A:T.160, A:T.160, A:A.162, A:A.162, A:C.283, A:C.283, A:N.586, A:N.596, A:T.598, A:T.598 Water bridges: A:G.25, A:G.333, A:G.333, A:A.334, A:N.586, A:L.599 pi-Stacking: A:W.159, A:H.553 FDA.2: 36 residues within 4Å: Chain B: G.20, S.21, G.22, P.23, I.24, V.42, E.43, I.44, I.96, L.100, T.149, R.150, G.151, G.154, M.155, S.156, H.158, W.159, T.160, C.161, A.162, H.281, R.282, C.283, A.331, C.332, G.333, A.336, V.340, L.552, H.553, G.585, N.586, N.596, P.597, T.598 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:I.96, B:L.100, B:W.159, B:L.552 Hydrogen bonds: B:G.22, B:I.24, B:I.44, B:T.149, B:G.151, B:G.153, B:G.154, B:M.155, B:T.160, B:T.160, B:T.160, B:A.162, B:A.162, B:C.283, B:C.283, B:N.586, B:N.596, B:T.598, B:T.598 Water bridges: B:G.25, B:G.333, B:G.333, B:A.334, B:N.586, B:L.599 pi-Stacking: B:W.159 pi-Cation interactions: B:H.553 FDA.4: 36 residues within 4Å: Chain C: G.20, S.21, G.22, P.23, I.24, V.42, E.43, I.44, I.96, L.100, T.149, R.150, G.151, G.154, M.155, S.156, H.158, W.159, T.160, C.161, A.162, H.281, R.282, C.283, A.331, C.332, G.333, A.336, V.340, L.552, H.553, G.585, N.586, N.596, P.597, T.598 31 PLIP interactions: 31 interactions with chain C Hydrophobic interactions: C:I.96, C:L.100, C:W.159, C:L.552 Hydrogen bonds: C:G.22, C:I.24, C:I.44, C:T.149, C:G.151, C:G.153, C:G.154, C:M.155, C:T.160, C:T.160, C:A.162, C:A.162, C:C.283, C:C.283, C:N.586, C:N.596, C:T.598, C:T.598, C:T.598 Water bridges: C:G.25, C:G.333, C:G.333, C:A.334, C:N.586, C:L.599 pi-Stacking: C:W.159 pi-Cation interactions: C:H.553 FDA.5: 36 residues within 4Å: Chain D: G.20, S.21, G.22, P.23, I.24, V.42, E.43, I.44, I.96, L.100, T.149, R.150, G.151, G.154, M.155, S.156, H.158, W.159, T.160, C.161, A.162, H.281, R.282, C.283, A.331, C.332, G.333, A.336, V.340, L.552, H.553, G.585, N.586, N.596, P.597, T.598 34 PLIP interactions: 34 interactions with chain D Hydrophobic interactions: D:I.96, D:L.100, D:W.159, D:L.552 Hydrogen bonds: D:G.22, D:I.24, D:I.44, D:T.149, D:G.151, D:G.153, D:G.154, D:M.155, D:M.155, D:T.160, D:T.160, D:A.162, D:A.162, D:C.283, D:C.283, D:N.586, D:N.596, D:T.598, D:T.598, D:T.598 Water bridges: D:G.25, D:T.160, D:T.160, D:G.333, D:G.333, D:A.334, D:N.586, D:L.599 pi-Stacking: D:W.159 pi-Cation interactions: D:H.553

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain B: E.202 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.202, H2O.15, H2O.15, H2O.15, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hassan, N. et al., Crystal structures of Phanerochaete chrysosporium pyranose 2-oxidase suggest that the N-terminus acts as a propeptide that assists in homotetramer assembly. FEBS Open Bio (2013)

Release Date

2013-12-11

Peptides

Pyranose 2-oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyranose 2-oxidase