SMTL ID : 4mih.1 (1 other biounit)

Pyranose 2-oxidase from Phanerochaete chrysosporium, recombinant H158A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 34 residues within 4Å: Chain A: G.21, S.22, G.23, P.24, I.25, V.43, E.44, I.45, T.150, R.151, G.152, G.155, M.156, S.157, A.159, W.160, T.161, C.162, A.163, H.282, R.283, C.284, A.332, C.333, G.334, A.337, V.341, L.553, G.586, N.587, N.597, P.598, T.599 Ligands: G3F.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:W.160, A:L.553 Hydrogen bonds: A:S.22, A:G.23, A:I.25, A:I.45, A:T.150, A:G.152, A:G.155, A:M.156, A:M.156, A:T.161, A:T.161, A:C.162, A:A.163, A:A.163, A:C.284, A:C.284, A:N.587, A:N.597, A:T.599, A:T.599 Water bridges: A:G.26, A:G.334 pi-Stacking: A:W.160, A:W.160 pi-Cation interactions: A:H.554 FAD.3: 33 residues within 4Å: Chain B: G.21, S.22, G.23, P.24, I.25, G.26, E.44, I.45, L.101, T.150, R.151, G.152, G.155, M.156, A.159, W.160, T.161, C.162, A.163, H.282, R.283, C.284, A.332, C.333, G.334, A.337, L.553, G.586, N.587, N.597, P.598, T.599 Ligands: G3F.4 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:L.101, B:W.160, B:L.553 Hydrogen bonds: B:S.22, B:I.25, B:G.26, B:I.45, B:T.150, B:G.152, B:G.155, B:M.156, B:M.156, B:T.161, B:C.162, B:A.163, B:A.163, B:C.284, B:C.284, B:N.587, B:N.597, B:T.599 Water bridges: B:G.334, B:G.334, B:L.600 pi-Stacking: B:W.160, B:W.160, B:W.160 pi-Cation interactions: B:H.554 FAD.5: 36 residues within 4Å: Chain C: G.21, S.22, G.23, P.24, I.25, V.43, E.44, I.45, I.97, T.150, R.151, G.152, G.154, G.155, M.156, S.157, A.159, W.160, T.161, C.162, A.163, H.282, R.283, C.284, A.332, C.333, G.334, A.337, V.341, L.553, G.586, N.587, N.597, P.598, T.599 Ligands: G3F.6 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:I.97, C:W.160, C:L.553 Hydrogen bonds: C:G.23, C:I.25, C:I.45, C:T.150, C:G.152, C:G.154, C:M.156, C:M.156, C:S.157, C:T.161, C:C.162, C:A.163, C:A.163, C:C.284, C:C.284, C:N.587, C:N.597, C:T.599 Water bridges: C:G.26, C:L.600 pi-Stacking: C:W.160 pi-Cation interactions: C:H.554 FAD.7: 36 residues within 4Å: Chain D: G.21, G.23, P.24, I.25, G.26, V.43, E.44, I.45, I.97, T.150, R.151, G.152, G.154, G.155, M.156, S.157, A.159, W.160, T.161, C.162, A.163, H.282, R.283, C.284, A.332, C.333, G.334, A.337, V.341, L.553, G.586, N.587, N.597, P.598, T.599 Ligands: G3F.8 28 PLIP interactions: 28 interactions with chain D Hydrophobic interactions: D:I.97, D:W.160, D:L.553 Hydrogen bonds: D:G.21, D:S.22, D:I.25, D:G.26, D:I.45, D:G.46, D:T.150, D:G.152, D:G.154, D:G.155, D:M.156, D:T.161, D:C.162, D:A.163, D:A.163, D:C.284, D:C.284, D:N.587, D:N.587, D:N.597, D:T.599, D:T.599 Water bridges: D:L.600 pi-Stacking: D:W.160, D:H.554

4 x G3F: 3-deoxy-3-fluoro-beta-D-glucopyranose(Non-covalent)

G3F.2: 12 residues within 4Å: Chain A: T.161, Q.455, H.457, D.459, F.461, Y.463, R.479, F.481, A.552, H.554, N.597 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.455, A:Y.463, A:H.554, A:N.597 Salt bridges: A:H.554 G3F.4: 12 residues within 4Å: Chain B: T.161, Q.455, H.457, D.459, F.461, Y.463, R.479, F.481, A.552, H.554, N.597 Ligands: FAD.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.455, B:H.554, B:N.597 Salt bridges: B:H.554 G3F.6: 12 residues within 4Å: Chain C: T.161, Q.455, H.457, D.459, F.461, Y.463, R.479, F.481, A.552, H.554, N.597 Ligands: FAD.5 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.455, C:H.457, C:D.459, C:H.554, C:N.597 Salt bridges: C:H.554 G3F.8: 12 residues within 4Å: Chain D: T.161, Q.455, H.457, D.459, F.461, Y.463, R.479, F.481, A.552, H.554, N.597 Ligands: FAD.7 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Q.455, D:H.457, D:Y.463, D:H.554, D:N.597 Salt bridges: D:H.554 Halogen bonds: D:Q.455

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hassan, N. et al., Crystal structures of Phanerochaete chrysosporium pyranose 2-oxidase suggest that the N-terminus acts as a propeptide that assists in homotetramer assembly. FEBS Open Bio (2013)

Release Date

2013-12-11

Peptides

Pyranose 2-oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyranose 2-oxidase

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