SMTL ID : 4mjw.1 (1 other biounit)

Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 39 residues within 4Å: Chain A: G.20, G.22, S.23, A.24, E.44, A.45, W.61, L.65, W.71, A.88, R.89, A.90, K.91, V.92, G.95, C.96, S.97, H.99, N.100, S.101, C.102, I.103, L.230, R.231, A.232, S.268, T.269, G.270, D.273, L.277, Y.465, H.466, D.499, A.500, N.510, P.511, N.512, V.515 Ligands: BET.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:W.61, A:L.65, A:N.100, A:Y.465, A:Y.465 Hydrogen bonds: A:G.21, A:S.23, A:S.23, A:A.24, A:A.45, A:A.90, A:V.92, A:C.96, A:N.100, A:S.101, A:I.103, A:I.103, A:A.232, A:A.232, A:A.500, A:N.510, A:N.512, A:N.512 Water bridges: A:G.22, A:G.25, A:R.89, A:R.89, A:R.89, A:R.89, A:A.90, A:A.271, A:I.513

1 x BET: TRIMETHYL GLYCINE(Non-covalent)

BET.2: 11 residues within 4Å: Chain A: W.61, S.101, I.103, E.312, W.331, H.351, V.464, Y.465, H.466, N.510 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.510 Salt bridges: A:E.312, A:H.351, A:H.466 pi-Cation interactions: A:W.331, A:H.351

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: F.84, R.363, H.364 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.84 Salt bridges: A:H.364

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: V.298, D.299, S.300, P.301, E.479, K.490 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.479 GOL.5: 1 residues within 4Å: Chain A: R.391 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salvi, F. et al., Structure of choline oxidase in complex with the reaction product glycine betaine. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-02-12

Peptides

Choline oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Choline oxidase

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