SMTL ID : 4ml2.1

Crystal structure of wild-type YafQ

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.53, D.64, H.66, I.72, H.90, F.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.64 Salt bridges: A:H.53, A:H.66, A:H.90 SO4.2: 3 residues within 4Å: Chain A: K.51, H.66, P.69 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.51, A:K.51 Salt bridges: A:K.51, A:H.66 SO4.3: 3 residues within 4Å: Chain A: R.25, T.89, A.92 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.92 Water bridges: A:R.25, A:R.25, A:R.25, A:R.25, A:T.89 Salt bridges: A:R.25 SO4.4: 2 residues within 4Å: Chain A: P.47, A.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.48 Water bridges: A:V.49 SO4.5: 3 residues within 4Å: Chain A: K.76, L.81, R.83 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.76, A:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, Y. et al., Structural and Functional Characterization of Escherichia coli Toxin-Antitoxin Complex DinJ-YafQ. J.Biol.Chem. (2014)

Release Date

2014-06-25

Peptides

mRNA interferase YafQ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

mRNA interferase YafQ