SMTL ID : 4mlb.1 (3 other biounits)

Reverse polarity of binding pocket suggests different function of a MOP superfamily transporter from Pyrococcus furiosus Vc1 (DSM3638)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

33 x CXE: PENTAETHYLENE GLYCOL MONODECYL ETHER(Non-covalent)

CXE.1: 8 residues within 4Å: Chain A: K.14, G.15, D.172, N.174, R.175, M.177 Ligands: CXE.6, CXE.15 Ligand excluded by PLIP CXE.2: 9 residues within 4Å: Chain A: I.50, W.51, I.188, V.189, P.192, I.193, Y.196, T.197 Ligands: CL.19 Ligand excluded by PLIP CXE.3: 6 residues within 4Å: Chain A: K.24, M.35, Y.329, I.337, V.341 Ligands: CXE.9 Ligand excluded by PLIP CXE.4: 8 residues within 4Å: Chain A: L.108, S.111, F.225, R.228, I.234, L.236 Ligands: CXE.16, CXE.17 Ligand excluded by PLIP CXE.5: 1 residues within 4Å: Chain A: Y.354 Ligand excluded by PLIP CXE.6: 6 residues within 4Å: Chain A: L.178, V.181, L.182, F.219, W.223 Ligands: CXE.1 Ligand excluded by PLIP CXE.7: 1 residues within 4Å: Chain A: F.385 Ligand excluded by PLIP CXE.8: 2 residues within 4Å: Chain A: F.348, Q.351 Ligand excluded by PLIP CXE.9: 6 residues within 4Å: Chain A: M.35, I.36, S.39, L.295, P.299 Ligands: CXE.3 Ligand excluded by PLIP CXE.10: 4 residues within 4Å: Chain A: L.76, L.114, G.253, L.254 Ligand excluded by PLIP CXE.11: 4 residues within 4Å: Chain A: R.148, A.152, F.155 Ligands: CXE.32 Ligand excluded by PLIP CXE.12: 3 residues within 4Å: Chain A: I.156, S.217, L.218 Ligand excluded by PLIP CXE.13: 8 residues within 4Å: Chain A: F.67, M.71, A.75, L.76, S.257, L.258, L.261, S.264 Ligand excluded by PLIP CXE.14: 4 residues within 4Å: Chain A: I.113, V.116, T.117, T.121 Ligand excluded by PLIP CXE.15: 2 residues within 4Å: Chain A: I.36 Ligands: CXE.1 Ligand excluded by PLIP CXE.16: 6 residues within 4Å: Chain A: F.225 Chain B: K.332, M.336 Ligands: CXE.4, CXE.17, CXE.33 Ligand excluded by PLIP CXE.17: 4 residues within 4Å: Chain A: F.225 Ligands: CXE.4, CXE.16, CXE.24 Ligand excluded by PLIP CXE.20: 8 residues within 4Å: Chain B: L.186, V.215, L.218, F.219, Y.222, V.226 Ligands: CXE.22, CXE.35 Ligand excluded by PLIP CXE.21: 4 residues within 4Å: Chain B: L.236, R.237, D.238, F.239 Ligand excluded by PLIP CXE.22: 9 residues within 4Å: Chain B: I.156, V.215, S.217, L.218, A.221, Y.222, V.226 Ligands: CXE.20, CXE.35 Ligand excluded by PLIP CXE.23: 6 residues within 4Å: Chain B: E.398, E.400, K.401, I.404, R.454 Ligands: CXE.34 Ligand excluded by PLIP CXE.24: 9 residues within 4Å: Chain A: L.218, A.221, V.226 Chain B: Y.329, I.333, M.336, I.337 Ligands: CXE.17, CXE.33 Ligand excluded by PLIP CXE.25: 7 residues within 4Å: Chain B: L.108, F.225, R.228, I.234, T.235, L.236 Ligands: CXE.35 Ligand excluded by PLIP CXE.26: 4 residues within 4Å: Chain B: L.411, V.412, V.415, G.416 Ligand excluded by PLIP CXE.27: 3 residues within 4Å: Chain B: M.413, G.416, F.417 Ligand excluded by PLIP CXE.28: 4 residues within 4Å: Chain B: L.198, G.199, F.200, Y.207 Ligand excluded by PLIP CXE.29: 4 residues within 4Å: Chain B: T.119, L.123, R.148, A.152 Ligand excluded by PLIP CXE.30: 10 residues within 4Å: Chain B: P.68, M.71, G.72, A.75, L.76, L.254, S.257, L.258, L.261, S.264 Ligand excluded by PLIP CXE.31: 11 residues within 4Å: Chain B: Y.44, N.45, F.70, I.74, A.179, G.183, S.184, N.187, T.209, M.213, T.216 Ligand excluded by PLIP CXE.32: 15 residues within 4Å: Chain A: E.145, R.148, V.149, A.152, F.200, V.203, Y.207 Chain B: L.347, F.348, P.350, Q.351, Y.354, L.355, K.366 Ligands: CXE.11 Ligand excluded by PLIP CXE.33: 7 residues within 4Å: Chain B: T.325, L.328, Y.329, K.332, M.336 Ligands: CXE.16, CXE.24 Ligand excluded by PLIP CXE.34: 3 residues within 4Å: Chain B: I.404, F.408 Ligands: CXE.23 Ligand excluded by PLIP CXE.35: 4 residues within 4Å: Chain B: F.225 Ligands: CXE.20, CXE.22, CXE.25 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.18: 3 residues within 4Å: Chain A: Y.222, W.223, K.227 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain A: T.197 Ligands: CXE.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zakrzewska, S. et al., Inward-facing conformation of a multidrug resistance MATE family transporter. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2013-09-25

Peptides

PF0708: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
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PF0708

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