SMTL ID : 4mmc.1

Crystal structure of LeuBAT (delta6 mutant) in complex with desvenlafaxine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: G.20, V.23, A.351, T.354, S.355 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.354, A:T.354 NA.2: 5 residues within 4Å: Chain A: A.22, N.27, S.254, N.286, E.290 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.27, A:S.254, A:N.286

2 x 29J: 4-[(1R)-2-(dimethylamino)-1-(1-hydroxycyclohexyl)ethyl]phenol(Non-covalent)

29J.3: 16 residues within 4Å: Chain A: Y.21, A.22, D.24, P.101, V.104, A.105, Y.107, Y.108, F.253, S.254, G.256, F.259, S.355, G.359, D.404 Ligands: 29J.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.104, A:Y.108, A:Y.108, A:F.259, A:F.259 Hydrogen bonds: A:S.355, A:D.404 Salt bridges: A:D.24 29J.4: 8 residues within 4Å: Chain A: R.30, I.111, F.320, L.400, D.401, D.404, T.409 Ligands: 29J.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.111, A:F.320, A:L.400 Hydrogen bonds: A:D.401 Water bridges: A:R.30 Salt bridges: A:D.404 pi-Stacking: A:F.320

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.5: 4 residues within 4Å: Chain A: K.163, H.391, F.395 Ligands: BOG.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.391, A:F.395, A:F.395 Hydrogen bonds: A:K.163, A:K.163 BOG.6: 5 residues within 4Å: Chain A: I.161, L.392, F.395, L.396 Ligands: BOG.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.161, A:I.161, A:L.392, A:F.395, A:L.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Structural basis for action by diverse antidepressants on biogenic amine transporters. Nature (2013)

Release Date

2013-10-16

Peptides

Transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Transporter

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