SMTL ID : 4mmi.1

Crystal structure of heparan sulfate lyase HepC mutant from Pedobacter heparinus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: P.165, H.217, E.221 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.221, H2O.1, H2O.3 CA.2: 4 residues within 4Å: Chain A: Q.402, D.420, G.422, H.445 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.420, A:H.445, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, W. et al., Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft. Biochemistry (2014)

Release Date

2014-01-29

Peptides

Heparinase III protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heparinase III protein