SMTL ID : 4mmk.2 (1 other biounit)

Q8A Hfq from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-hexamer

Ligands

11 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.57 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.57, H2O.1 ZN.3: 1 residues within 4Å: Chain B: H.57 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.57, H2O.1, H2O.1, H2O.1 ZN.4: 2 residues within 4Å: Chain B: H.5, D.9 No protein-ligand interaction detected (PLIP) ZN.6: 1 residues within 4Å: Chain C: H.57 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.57, H2O.2, H2O.2, H2O.2 ZN.7: 1 residues within 4Å: Chain C: H.5 No protein-ligand interaction detected (PLIP) ZN.8: 1 residues within 4Å: Chain C: E.18 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.18 ZN.10: 1 residues within 4Å: Chain D: H.57 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.57, H2O.3, H2O.3, H2O.3 ZN.12: 1 residues within 4Å: Chain E: H.57 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:H.57, H2O.4, H2O.4, H2O.5 ZN.13: 2 residues within 4Å: Chain E: H.5, D.9 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.9, H2O.5, H2O.6 ZN.15: 1 residues within 4Å: Chain F: H.57 3 PLIP interactions: 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.57, H2O.5, H2O.6 ZN.16: 2 residues within 4Å: Chain F: H.5, D.9 No protein-ligand interaction detected (PLIP)

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: E.18, R.66, R.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.18, A:R.66, A:R.66, A:R.69 NA.11: 1 residues within 4Å: Chain D: H.5 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.5 NA.14: 1 residues within 4Å: Chain E: E.18 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.18

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain B: K.47, N.48, T.49 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.48

2 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)

K.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) K.17: 1 residues within 4Å: Chain F: D.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murina, V.N. et al., Effect of conserved intersubunit amino Acid substitutions on hfq protein structure and stability. Biochemistry Mosc. (2014)

Release Date

2014-07-09

Peptides

Protein hfq: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

Protein hfq

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