SMTL ID : 4mmq.1

Crystal Structure of Prefusion-stabilized RSV F Variant DS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-3-3-mer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.66, L.70 Chain D: L.122 Ligands: SO4.10 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain B: V.224, S.226, Q.326 Chain F: V.16, K.20 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain B: I.296, V.306, S.307, K.309, G.310, V.311 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain B: T.117, N.118, S.119 Chain E: N.63 Ligands: SO4.13 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain B: N.290, N.292, R.293 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain B: K.309, G.310, K.325 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain C: T.66, L.70 Chain F: L.122 Ligands: SO4.16 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: V.16, K.20 Chain D: V.224, S.226, Q.326 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain D: I.296, V.306, S.307, K.309, G.310, V.311 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain A: N.63 Chain D: T.117, N.118, S.119 Ligands: SO4.1 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain D: N.290, N.292, R.293 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain D: K.309, G.310, K.325 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: L.122 Chain E: T.66, L.70 Ligands: SO4.4 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain D: V.16, K.20 Chain F: V.224, S.226, Q.326 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain F: I.296, V.306, S.307, K.309, G.310, V.311 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain C: N.63 Chain F: T.117, N.118, S.119 Ligands: SO4.7 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain F: N.290, N.292, R.293 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain F: K.309, G.310, K.325 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McLellan, J.S. et al., Structure-based design of a fusion glycoprotein vaccine for respiratory syncytial virus. Science (2013)

Release Date

2013-11-20

Peptides

Fusion glycoprotein F2: ACE
Fusion glycoprotein F1 fused with Fibritin trimerization domain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Fusion glycoprotein F2

Fusion glycoprotein F1 fused with Fibritin trimerization domain

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