SMTL ID : 4mnx.1

Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK811

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.95, T.178, K.180, M.181 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.178 Water bridges: A:N.96, A:N.96, A:T.179 Salt bridges: A:H.95, A:K.180 SO4.2: 4 residues within 4Å: Chain A: F.131, S.163, H.164, R.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.164, A:R.165

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: R.20, H.22, R.23, Y.51 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.20, A:R.20, A:H.22, A:R.23, A:Y.51

1 x 29N: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one(Covalent)

29N.4: 6 residues within 4Å: Chain B: L.1, C.2, C.7, R.10, W.11, C.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, S. et al., Peptide ligands stabilized by small molecules. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-02-05

Peptides

Urokinase-type plasminogen activator chain B: A
bicyclic peptide UK811: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Urokinase-type plasminogen activator chain B

bicyclic peptide UK811

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