SMTL ID : 4mob.1

Acyl-Coenzyme A thioesterase 12 in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

3 x COA: COENZYME A(Non-covalent)

COA.1: 22 residues within 4Å: Chain A: V.48, T.49, A.50, S.51, F.77, S.78, T.79, S.80, T.106, V.108, R.140, R.143, L.144, T.196, G.198, I.201, K.230, F.231, R.232, G.233, P.234, S.235 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.48, A:A.50, A:V.108 Hydrogen bonds: A:T.49, A:S.51, A:S.78, A:T.79, A:S.80, A:S.80, A:R.140, A:K.230, A:K.230, A:F.231 Water bridges: A:S.80, A:R.143 Salt bridges: A:R.140, A:K.230 COA.3: 22 residues within 4Å: Chain B: V.48, T.49, A.50, S.51, F.77, S.78, T.79, S.80, T.106, V.108, R.140, R.143, L.144, T.196, G.198, I.201, K.230, F.231, R.232, G.233, P.234, S.235 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:V.48, B:A.50, B:V.108 Hydrogen bonds: B:T.49, B:S.51, B:S.78, B:T.79, B:S.80, B:S.80, B:R.140, B:K.230, B:K.230, B:F.231 Water bridges: B:S.80, B:R.143 Salt bridges: B:R.140, B:K.230 COA.5: 22 residues within 4Å: Chain C: V.48, T.49, A.50, S.51, F.77, S.78, T.79, S.80, T.106, V.108, R.140, R.143, L.144, T.196, G.198, I.201, K.230, F.231, R.232, G.233, P.234, S.235 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:V.48, C:A.50, C:V.108 Hydrogen bonds: C:T.49, C:S.51, C:S.78, C:T.79, C:S.80, C:S.80, C:R.140, C:K.230, C:K.230, C:F.231 Water bridges: C:S.80, C:R.143 Salt bridges: C:R.140, C:K.230

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: T.244, A.245, I.246, N.248, G.258, V.259, R.260, H.276, S.279, F.281, R.308, R.309 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.244, A:I.246, A:N.248, A:N.248, A:G.258, A:S.279, A:R.309, A:R.309 Water bridges: A:R.260, A:R.316, A:R.316 Salt bridges: A:R.260, A:R.308, A:R.309 pi-Cation interactions: A:R.309 ADP.4: 12 residues within 4Å: Chain B: T.244, A.245, I.246, N.248, G.258, V.259, R.260, H.276, S.279, F.281, R.308, R.309 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:T.244, B:I.246, B:N.248, B:N.248, B:G.258, B:S.279, B:R.309, B:R.309 Water bridges: B:R.260, B:R.316, B:R.316 Salt bridges: B:R.260, B:R.308, B:R.309 pi-Cation interactions: B:R.309 ADP.6: 12 residues within 4Å: Chain C: T.244, A.245, I.246, N.248, G.258, V.259, R.260, H.276, S.279, F.281, R.308, R.309 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:T.244, C:I.246, C:N.248, C:N.248, C:G.258, C:S.279, C:R.309, C:R.309 Water bridges: C:R.260, C:R.316, C:R.316 Salt bridges: C:R.260, C:R.308, C:R.309 pi-Cation interactions: C:R.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swarbrick, C.M. et al., Structural basis for regulation of the human acetyl-CoA thioesterase 12 and interactions with the steroidogenic acute regulatory protein-related lipid transfer (START) domain. J.Biol.Chem. (2014)

Release Date

2014-07-16

Peptides

Acyl-coenzyme A thioesterase 12: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Acyl-coenzyme A thioesterase 12

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