- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Covalent)
- 4 x 2H5: 3-deoxy-3-fluoro-beta-D-galactopyranose(Non-covalent)
2H5.2: 10 residues within 4Å:- Chain A: T.169, Q.448, D.452, Y.456, R.472, F.474, V.546, H.548, N.593
- Ligands: FDA.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.169, A:T.169, A:Y.456, A:N.593
- Salt bridges: A:H.548
2H5.6: 10 residues within 4Å:- Chain B: T.169, Q.448, D.452, F.454, Y.456, F.474, V.546, H.548, N.593
- Ligands: FDA.5
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.169, B:T.169, B:N.593
- Salt bridges: B:H.548
2H5.9: 12 residues within 4Å:- Chain C: T.169, Q.448, D.452, F.454, Y.456, R.472, F.474, L.545, V.546, H.548, N.593
- Ligands: FDA.8
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.169, C:Y.456, C:Y.456, C:N.593
- Salt bridges: C:H.548
2H5.12: 11 residues within 4Å:- Chain D: T.169, Q.448, D.452, F.454, Y.456, R.472, F.474, V.546, H.548, N.593
- Ligands: FDA.11
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.169, D:Y.456, D:Y.456, D:N.593
- Salt bridges: D:H.548
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.3: 7 residues within 4Å:- Chain A: P.144, E.145, Q.146, D.147, P.148, R.339
- Chain D: S.134
No protein-ligand interaction detected (PLIP)1PE.7: 9 residues within 4Å:- Chain B: P.144, E.145, Q.146, D.147, P.148, R.339
- Chain C: S.134, T.135, F.136
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.339
1PE.10: 7 residues within 4Å:- Chain B: S.134
- Chain C: P.144, E.145, Q.146, D.147, P.148, R.339
No protein-ligand interaction detected (PLIP)1PE.13: 7 residues within 4Å:- Chain A: S.134, T.135, F.136
- Chain D: P.144, Q.146, D.147, P.148
1 PLIP interactions:1 interactions with chain A- Water bridges: A:F.136
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.4: 14 residues within 4Å:- Chain A: S.462, I.463, D.464, L.467
- Chain B: L.121, V.122, V.123, W.131, Q.132, A.133, T.135, F.137, R.139
- Chain C: L.149
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:V.123, B:Q.132, B:Q.132, B:Q.132, B:A.133, A:S.462, A:D.464
- Salt bridges: B:R.139
MES.14: 7 residues within 4Å:- Chain D: G.398, A.399, S.400, N.402, K.403, H.404, P.405
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:H.404
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tan, T.C. et al., Structural Basis for Binding of Fluorinated Glucose and Galactose to Trametes multicolor Pyranose 2-Oxidase Variants with Improved Galactose Conversion. Plos One (2014)
- Release Date
- 2014-02-05
- Peptides
- Pyranose 2-oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Covalent)
- 4 x 2H5: 3-deoxy-3-fluoro-beta-D-galactopyranose(Non-covalent)
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tan, T.C. et al., Structural Basis for Binding of Fluorinated Glucose and Galactose to Trametes multicolor Pyranose 2-Oxidase Variants with Improved Galactose Conversion. Plos One (2014)
- Release Date
- 2014-02-05
- Peptides
- Pyranose 2-oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D