SMTL ID : 4mp3.1

Staphyloferrin B precursor biosynthetic enzyme selenomethionine-labeled SbnB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.48, M.67, K.81, S.122, R.125, M.310, G.311 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.122 Salt bridges: A:K.48, A:K.81, A:R.125 SO4.3: 3 residues within 4Å: Chain A: P.222, H.244, K.245 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.245 Water bridges: A:E.246 Salt bridges: A:H.244 SO4.4: 7 residues within 4Å: Chain B: K.48, M.67, K.81, S.122, R.125, M.310, G.311 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.122 Water bridges: B:T.126 Salt bridges: B:K.48, B:K.81, B:R.125 SO4.6: 3 residues within 4Å: Chain B: P.222, H.244, K.245 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.245 Water bridges: B:E.246 Salt bridges: B:H.244

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.97, G.151, L.152, I.153 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.97, A:L.152, A:I.153 Water bridges: A:G.151 GOL.5: 4 residues within 4Å: Chain B: R.97, G.151, L.152, I.153 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.97, B:L.152, B:I.153 Water bridges: B:G.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobylarz, M.J. et al., Synthesis of L-2,3-diaminopropionic Acid, a siderophore and antibiotic precursor. Chem.Biol. (2014)

Release Date

2014-03-05

Peptides

Putative ornithine cyclodeaminase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative ornithine cyclodeaminase

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