SMTL ID : 4mq6.1 (1 other biounit)

Pantothenate synthase in complex with 2-(5-methoxy-2-(tosylcarbamoyl)-1H-indol-1-yl)acetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

8 x EOH: ETHANOL(Non-functional Binders)

EOH.1: 5 residues within 4Å: Chain A: R.115, T.117 Chain B: Q.119, P.120 Ligands: 29W.5 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.119, A:T.117, A:T.117 EOH.2: 1 residues within 4Å: Chain A: T.218 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.218 EOH.3: 2 residues within 4Å: Chain A: N.176 Chain B: A.21 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.21 Water bridges: B:G.18 Hydrogen bonds: A:N.176 EOH.7: 4 residues within 4Å: Chain A: R.188, E.189, A.190, G.192 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.189 Water bridges: A:R.188 EOH.8: 3 residues within 4Å: Chain A: Y.82, P.83, R.84 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.83 Hydrogen bonds: A:R.84 Water bridges: A:R.84 EOH.9: 7 residues within 4Å: Chain A: Q.148, R.151 Chain B: L.147, Q.148, L.177, D.178, V.179 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.177, B:V.179 Hydrogen bonds: B:Q.148, B:D.178, A:Q.148 EOH.10: 5 residues within 4Å: Chain A: M.40, N.69, Q.72, V.142 Ligands: 29W.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.69, A:V.142 Water bridges: A:F.67 EOH.11: 1 residues within 4Å: Chain A: A.226 No protein-ligand interaction detected (PLIP)

3 x 29W: (5-methoxy-2-{[(4-methylphenyl)sulfonyl]carbamoyl}-1H-indol-1-yl)acetic acid(Non-covalent)

29W.4: 22 residues within 4Å: Chain A: P.38, T.39, M.40, H.44, G.46, H.47, L.50, Y.82, V.143, F.157, G.158, K.160, D.161, Q.164, V.184, P.185, T.186, V.187, M.195, S.196, S.197 Ligands: EOH.10 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.143, A:F.157, A:F.157, A:K.160, A:T.186 Hydrogen bonds: A:M.40, A:H.47, A:V.187, A:S.197 Water bridges: A:Q.164 Salt bridges: A:H.44, A:K.160 pi-Stacking: A:H.44, A:H.44 29W.5: 9 residues within 4Å: Chain A: M.71, L.114, T.117, P.133, T.134, A.137, G.138 Chain B: Q.119 Ligands: EOH.1 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.114, A:T.117, A:P.133, A:P.133, A:T.134 Hydrogen bonds: B:Q.119 29W.12: 20 residues within 4Å: Chain B: P.38, T.39, M.40, H.44, G.46, H.47, L.50, V.139, V.143, F.157, K.160, D.161, Q.164, P.185, T.186, V.187, M.195, S.196, S.197 Ligands: EDO.15 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.139, B:V.143, B:F.157, B:T.186 Hydrogen bonds: B:M.40, B:H.47, B:V.187, B:S.197 Water bridges: B:K.160, B:D.161 Salt bridges: B:H.44, B:K.160 pi-Stacking: B:H.44, B:H.44

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 8 residues within 4Å: Chain A: M.109, Y.110, G.113, L.114, R.115, T.116, K.145 Chain B: D.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.109, A:R.115, A:T.116, A:K.145 EDO.13: 9 residues within 4Å: Chain A: D.174 Chain B: M.109, Y.110, G.113, L.114, R.115, T.116, T.117, K.145 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.115, B:K.145, B:K.145 Water bridges: B:D.112 EDO.14: 5 residues within 4Å: Chain B: G.244, A.246, R.273, L.274, G.275 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.273, B:G.275 EDO.15: 8 residues within 4Å: Chain B: P.38, T.39, M.40, F.67, N.69, V.142, L.146 Ligands: 29W.12 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.39, B:F.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hung, A.W. et al., Optimization of Inhibitors of Mycobacterium tuberculosis Pantothenate Synthetase Based on Group Efficiency Analysis. Chemmedchem (2016)

Release Date

2014-08-27

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase

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