SMTL ID : 4mre.1

Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: C.9, C.111, T.112, S.113, N.131, R.132, D.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.132, A:D.133 Salt bridges: A:D.133

1 x 2C9: 3-methylbenzene-1,2-diamine(Non-covalent)

2C9.2: 7 residues within 4Å: Chain A: N.6, V.7, T.8, E.18, V.130, N.131, R.132 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.6 Hydrogen bonds: A:V.7, A:E.18 pi-Cation interactions: A:R.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L.K. et al., Fragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors. J.Med.Chem. (2014)

Release Date

2014-04-16

Peptides

CD44 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 antigen

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