SMTL ID : 4mrq.1

Crystal Structure of wild-type unphosphorylated PMM/PGM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: K.110, D.234, D.236, D.238 Ligands: TLA.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.234, A:D.236, A:D.238

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 10 residues within 4Å: Chain A: R.7, S.100, H.101, K.110, D.234, D.236, D.238, R.239, H.321 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.10, A:H.101, A:R.239 Water bridges: A:K.110, A:K.110, A:H.300, A:H.321 Salt bridges: A:R.7, A:H.101, A:K.110, A:R.239, A:H.321

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: T.396, T.397, L.398 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.395, A:T.397, A:L.398 EDO.12: 3 residues within 4Å: Chain A: P.293, V.294, M.295 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.295 Water bridges: A:M.295 EDO.13: 4 residues within 4Å: Chain A: R.413, S.415, N.416, T.417 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.413, A:R.413, A:N.416, A:T.417, A:T.417 Water bridges: A:T.298, A:T.298 EDO.14: 4 residues within 4Å: Chain A: Q.154, R.327, W.328, F.329 No protein-ligand interaction detected (PLIP)

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: Y.251, M.318, T.365, E.367, R.424 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.364, A:S.364, A:E.367 PEG.5: 5 residues within 4Å: Chain A: A.21, E.22, Y.25, W.26, Q.59 No protein-ligand interaction detected (PLIP) PEG.6: 2 residues within 4Å: Chain A: W.26, I.130 No protein-ligand interaction detected (PLIP) PEG.7: 4 residues within 4Å: Chain A: Y.84, V.88, L.89, D.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.84, A:D.146 Water bridges: A:D.146 PEG.8: 4 residues within 4Å: Chain A: N.120, W.296, K.297, L.302 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.120, A:K.297 Water bridges: A:Y.9, A:Y.9, A:Y.9, A:W.296

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.9: 6 residues within 4Å: Chain A: L.258, K.261, S.265, D.348, R.350, F.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.261, A:R.350 PGE.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PGE.11: 2 residues within 4Å: Chain A: E.374, D.375 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase. J.Biol.Chem. (2014)

Release Date

2014-01-08

Peptides

Phosphomannomutase/phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphomannomutase/phosphoglucomutase