SMTL ID : 4ms8.1

42F3 TCR pCPB9/H-2Ld Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x SER- PRO- ALA- GLU- ALA- GLY- PHE- PHE- LEU: pCPB9(Non-covalent)

SER-PRO-ALA-GLU-ALA-GLY-PHE-PHE-LEU.1: 29 residues within 4Å: Chain A: Y.55 Chain B: N.32, D.97, A.98, P.99 Chain C: Y.8, Y.46, R.63, I.64, I.67, Q.71, W.74, V.77, N.78, T.81, W.98, Y.100, Y.124, T.144, K.147, W.148, A.151, G.152, A.153, Y.156, Y.157, Y.160, W.168, Y.172 29 PLIP interactions: 26 interactions with chain C, 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: C:Y.8, C:Y.46, C:I.64, C:W.74, C:V.77, C:N.78, C:W.98, C:Y.100, C:Y.124, C:T.144, C:W.148, C:A.151, C:A.153, C:Y.156, C:Y.156, C:Y.160, B:N.32, B:A.98, A:Y.55 Hydrogen bonds: C:R.63, C:Q.71, C:N.78, C:Y.100, C:Y.100, C:Y.157, C:Y.160, C:Y.172 Water bridges: C:Y.156 pi-Stacking: C:W.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, J.J. et al., Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity. Nat. Immunol. (2016)

Release Date

2014-09-24

Peptides

42F3 alpha: A
42F3 beta: B
H-2 class I histocompatibility antigen, L-D alpha chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

42F3 alpha

42F3 beta

H-2 class I histocompatibility antigen, L-D alpha chain

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