SMTL ID : 4msp.1

Crystal structure of human peptidyl-prolyl cis-trans isomerase FKBP22 (aka FKBP14) containing two EF-hand motifs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.137, N.139, D.141, K.143, E.148 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.137, A:D.141, A:K.143, A:E.148, H2O.2 CA.2: 5 residues within 4Å: Chain A: D.181, D.183, D.185, F.187, E.192 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.181, A:D.185, A:E.192, A:E.192, H2O.3 CA.3: 4 residues within 4Å: Chain A: E.180, E.192, Y.195, H.197 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.180, A:E.192, A:Y.195, A:H.197 CA.9: 5 residues within 4Å: Chain B: D.137, N.139, D.141, K.143, E.148 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.137, B:D.141, B:K.143, B:E.148, H2O.7 CA.10: 5 residues within 4Å: Chain B: D.181, D.183, D.185, F.187, E.192 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.181, B:D.183, B:F.187, B:E.192, H2O.11

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 14 residues within 4Å: Chain A: M.136, Y.152, L.153, E.156, F.157, H.160, A.162, F.193 Chain B: Y.152, L.153, E.156, F.157, H.160 Ligands: PGO.6 No protein-ligand interaction detected (PLIP) 1PE.5: 6 residues within 4Å: Chain A: P.96, A.97, G.101, K.102, E.103, E.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.102, A:E.103 Water bridges: A:A.97

8 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.6: 10 residues within 4Å: Chain A: H.160, G.161, A.162 Chain B: L.144, V.149, E.180, I.188, F.193, K.196 Ligands: 1PE.4 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.144, B:V.149 Hydrogen bonds: B:K.196, B:K.196, A:G.161 PGO.7: 6 residues within 4Å: Chain A: P.24, F.25, C.27 Chain B: L.138, N.139, D.140 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.140, B:D.140 PGO.8: 7 residues within 4Å: Chain A: H.40, Y.41, E.42, H.56, K.89, N.117, D.119 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.119 Hydrogen bonds: A:E.42, A:N.117 PGO.11: 4 residues within 4Å: Chain A: R.128, S.132, F.193 Chain B: H.160 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:H.160, A:R.128 Hydrogen bonds: A:S.132, A:S.132 PGO.12: 3 residues within 4Å: Chain B: R.29, I.123, R.124 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.29, B:I.123 Water bridges: B:E.122, B:I.123, B:N.125 PGO.13: 4 residues within 4Å: Chain A: L.138, D.147 Chain B: C.27, H.28 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.28 Water bridges: B:C.27 Hydrophobic interactions: A:L.138, A:D.147 PGO.14: 3 residues within 4Å: Chain B: V.20, L.21, K.23 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:K.23 PGO.15: 3 residues within 4Å: Chain B: L.36, W.65, R.124 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.65 Hydrogen bonds: B:R.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boudko, S.P. et al., Structure of human peptidyl-prolyl cis-trans isomerase FKBP22 containing two EF-hand motifs. Protein Sci. (2014)

Release Date

2013-12-25

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP14: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase FKBP14