SMTL ID : 4msu.1 (1 other biounit)

Human GKRP bound to AMG-6861 and Sorbitol-6-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 2EU: 1,1,1,3,3,3-HEXAFLUORO-2-{4-[4-(THIOPHEN-2-YLSULFONYL)PIPERAZIN-1-YL]PHENYL}PROPAN-2-OL(Non-covalent)

2EU.1: 16 residues within 4Å: Chain A: Y.35, V.39, P.40, E.43, K.44, S.45, G.192, S.194, R.226, D.228, H.515, K.525, W.528, A.532, M.533, R.536 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.39, A:V.39, A:E.43, A:R.226, A:A.532 Hydrogen bonds: A:R.536 Salt bridges: A:E.43 Halogen bonds: A:E.43

1 x S6P: SUGAR (D-SORBITOL-6-PHOSPHATE)(Non-covalent)

S6P.2: 15 residues within 4Å: Chain A: G.118, G.119, T.120, S.121, E.161, E.164, S.190, V.191, G.192, A.195, S.268, S.269, R.270, H.362, K.525 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.120, A:T.120, A:T.120, A:S.121, A:S.121, A:E.161, A:V.191, A:G.192, A:A.195, A:S.268, A:S.269, A:R.270, A:K.525 Water bridges: A:S.121 Salt bridges: A:K.525

11 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 2 residues within 4Å: Chain A: Y.479, F.483 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: L.517, C.609 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.84, G.261 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: A.57, L.507 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: T.309, L.475 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.160, G.162 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: G.14, T.15, K.16, R.17 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain A: N.207 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain A: T.24, E.26, G.539, S.541 Ligand excluded by PLIP IOD.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: S.332, T.333, E.336 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 6 residues within 4Å: Chain A: T.15, F.18, Q.19, K.542, A.543, I.546 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.542

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Ashton, K.S. et al., Small Molecule Disruptors of the Glucokinase-Glucokinase Regulatory Protein Interaction: 1. Discovery of a Novel Tool Compound for in Vivo Proof-of-Concept. J.Med.Chem. (2014)

Release Date

2014-03-12

Peptides

Glucokinase regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase regulatory protein

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