SMTL ID : 4mtj.1

Structure of the b12-independent glycerol dehydratase with 1,2-propanediol bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.1: 12 residues within 4Å: Chain A: N.156, H.164, H.281, S.282, F.333, Y.339, G.432, C.433, E.435, D.447, Y.640, S.642 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.333, A:Y.339 Hydrogen bonds: A:N.156, A:H.164, A:S.282, A:C.433, A:E.435, A:D.447 PGO.2: 10 residues within 4Å: Chain B: H.164, H.281, S.282, F.333, Y.339, G.432, C.433, E.435, D.447, Y.640 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.333, B:Y.339 Hydrogen bonds: B:N.156, B:H.164, B:S.282, B:C.433, B:E.435, B:D.447

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

LaMattina, J. et al., When Computational Chemistry and Modern Software Get It Right; New Insight Into the Mechanism of a Glycyl Radical Enzyme. To be Published

Release Date

2013-10-09

Peptides

B12-independent glycerol dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

B12-independent glycerol dehydratase

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