SMTL ID : 4mtz.2 (1 other biounit)

Structure of XIAP-BIR1 in complex with NF023

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.75, C.78, H.95, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.75, A:C.78, A:H.95, A:C.102 ZN.3: 4 residues within 4Å: Chain B: C.75, C.78, H.95, C.102 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.75, B:C.78, B:H.95, B:C.102

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: T.72, A.81, D.83 Chain B: R.94, K.97, V.98 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.83, B:R.94 Water bridges: B:R.94, B:R.94 Salt bridges: B:R.94

1 x 0BU: 8-({3-[({3-[(4,6,8-trisulfonaphthalen-1-yl)carbamoyl]phenyl}carbamoyl)amino]benzoyl}amino)naphthalene-1,3,5-trisulfonic acid(Non-covalent)

0BU.4: 15 residues within 4Å: Chain A: R.74, C.78, H.79, S.99, P.100, N.101, C.102 Chain B: R.74, C.78, H.79, V.98, S.99, P.100, N.101, C.102 22 PLIP interactions: 11 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:H.79, B:P.100, B:N.101, A:H.79, A:P.100 Hydrogen bonds: B:C.78, B:C.78, B:N.101, B:N.101, A:N.101, A:N.101 Water bridges: B:R.74, A:R.74, A:R.74, A:R.74, A:R.74 Salt bridges: B:R.74, B:H.79, B:H.79, A:R.74, A:H.79 pi-Stacking: A:H.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cossu, F. et al., Protein-protein interactions in nfkb pathway: novel tools to promote apoptosis in cancer therapy. To be Published

Release Date

2014-09-24

Peptides

E3 ubiquitin-protein ligase XIAP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

E3 ubiquitin-protein ligase XIAP

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