SMTL ID : 4mu9.1 (1 other biounit)

Crystal structure of a putative glycosylhydrolase (BT_3782) from Bacteroides thetaiotaomicron VPI-5482 at 1.89 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: Y.40, L.41, L.56, W.57, S.105, Y.116, D.119 Ligands: EPE.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.56, A:W.57, A:S.105 Water bridges: A:D.119 EDO.2: 2 residues within 4Å: Chain A: D.23, Q.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.92 Water bridges: A:D.23, A:Q.92, A:K.109 EDO.3: 3 residues within 4Å: Chain A: E.157, F.163, L.225 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: T.39, Y.40, R.336, W.348 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.39, A:R.336 Water bridges: A:Q.36, A:R.336, A:E.344 EDO.5: 4 residues within 4Å: Chain A: R.98, Q.112, H.113, G.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.98 Water bridges: A:Q.167 EDO.6: 4 residues within 4Å: Chain A: C.212, F.217, D.260, K.263 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.260, A:D.260, A:K.263 EDO.7: 3 residues within 4Å: Chain A: Q.20, T.21, E.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.22

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.8: 11 residues within 4Å: Chain A: T.39, Y.40, W.57, D.118, D.119, W.122, W.164, C.175, Y.236, W.291 Ligands: EDO.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.119 Water bridges: A:T.39, A:D.118, A:D.118 Salt bridges: A:D.118, A:D.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative glycosylhydrolase (BT_3782) from Bacteroides thetaiotaomicron VPI-5482 at 1.89 A resolution. To be published

Release Date

2013-10-09

Peptides

Glycoside hydrolase family 73: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside hydrolase family 73

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