SMTL ID : 4mwh.1 (1 other biounit)

Crystal structure of scCK2 alpha in complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: G.49, R.50, G.51, K.52, Y.53, S.54, V.56, V.69, K.71, I.136, E.155, V.157, D.197, K.199, H.201, N.202, M.204, I.215, D.216 Ligands: MG.2, SO4.7 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:K.52, A:Y.53, A:S.54, A:E.155, A:V.157, A:D.197, A:D.197, A:N.202, A:D.216, A:D.216 Water bridges: A:R.50, A:K.71, A:H.201, A:N.202, A:D.216 Salt bridges: A:K.71, A:K.71, A:K.199

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.202, D.216 Ligands: ATP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.216, H2O.5 MG.3: 3 residues within 4Å: Chain A: H.189, T.355, A.356 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.189, H2O.1, H2O.3

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.270, K.319, R.323 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.270, A:K.319, A:R.323 SO4.5: 1 residues within 4Å: Chain A: R.163 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.163 SO4.6: 4 residues within 4Å: Chain A: R.83, R.196, N.230, V.233 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.230 Water bridges: A:R.196, A:N.230 Salt bridges: A:R.83, A:R.196 SO4.7: 4 residues within 4Å: Chain A: G.51, K.199, H.201 Ligands: ATP.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.52 Salt bridges: A:K.199, A:H.201 SO4.8: 2 residues within 4Å: Chain A: R.236, N.279 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.279 Water bridges: A:K.239, A:K.239 Salt bridges: A:R.236, A:K.239 SO4.9: 5 residues within 4Å: Chain A: R.318, P.320, W.321, H.322, I.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.321, A:H.322 Salt bridges: A:R.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway. Acta Crystallogr.,Sect.D (2014)

Release Date

2013-11-20

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

Related Entries With Identical Sequence