SMTL ID : 4mwj.1

Anhui N9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.1: 18 residues within 4Å: Chain A: N.119, N.120 Chain C: R.247, N.249, D.250, R.283, I.285, T.287, E.294, L.296, P.309, I.310, Q.311, G.312, F.372, L.373, G.374, Q.375 5 PLIP interactions: 5 interactions with chain C Water bridges: C:P.309, C:G.312, C:Q.311, C:Q.311, C:Q.375 Hydrophobic interactions: C:F.372 Hydrogen bonds: C:G.312 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.5: 18 residues within 4Å: Chain B: N.119, N.120 Chain D: R.247, N.249, D.250, R.283, I.285, T.287, E.294, L.296, P.309, I.310, Q.311, G.312, F.372, L.373, G.374, Q.375 5 PLIP interactions: 5 interactions with chain D Water bridges: D:P.309, D:G.312, D:Q.311, D:Q.311, D:Q.375 Hydrophobic interactions: D:F.372 Hydrogen bonds: D:G.312 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.9: 18 residues within 4Å: Chain B: R.247, N.249, D.250, R.283, I.285, T.287, E.294, L.296, P.309, I.310, Q.311, G.312, F.372, L.373, G.374, Q.375 Chain C: N.119, N.120 5 PLIP interactions: 5 interactions with chain B Water bridges: B:P.309, B:G.312, B:Q.311, B:Q.311, B:Q.375 Hydrophobic interactions: B:F.372 Hydrogen bonds: B:G.312 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.13: 18 residues within 4Å: Chain A: R.247, N.249, D.250, R.283, I.285, T.287, E.294, L.296, P.309, I.310, Q.311, G.312, F.372, L.373, G.374, Q.375 Chain D: N.119, N.120 5 PLIP interactions: 5 interactions with chain A Water bridges: A:P.309, A:G.312, A:Q.311, A:Q.311, A:Q.375 Hydrophobic interactions: A:F.372 Hydrogen bonds: A:G.312

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.2, F.3, N.5, N.154 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.2 Hydrogen bonds: A:N.2, A:F.3, A:N.5 Water bridges: A:F.3 NAG.3: 2 residues within 4Å: Chain A: N.65, W.357 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.65, A:W.357 NAG.6: 4 residues within 4Å: Chain B: N.2, F.3, N.5, N.154 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:N.2 Hydrogen bonds: B:N.2, B:F.3, B:N.5 Water bridges: B:F.3 NAG.7: 2 residues within 4Å: Chain B: N.65, W.357 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:N.65, B:W.357 Water bridges: D:Y.386, D:Y.386 NAG.10: 4 residues within 4Å: Chain C: N.2, F.3, N.5, N.154 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:N.2 Hydrogen bonds: C:N.2, C:F.3, C:N.5 Water bridges: C:F.3 NAG.11: 2 residues within 4Å: Chain C: N.65, W.357 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:N.65, C:W.357 Water bridges: B:Y.386, B:Y.386 NAG.14: 4 residues within 4Å: Chain D: N.2, F.3, N.5, N.154 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:N.2 Hydrogen bonds: D:N.2, D:F.3, D:N.5 Water bridges: D:F.3 NAG.15: 2 residues within 4Å: Chain D: N.65, W.357 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.65, D:W.357

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: D.213, G.217, D.244, N.266, G.267 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.213, A:G.217, A:D.244, A:N.266, H2O.2, H2O.2 CA.8: 5 residues within 4Å: Chain B: D.213, G.217, D.244, N.266, G.267 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.213, B:G.217, B:D.244, B:N.266, H2O.24, H2O.24 CA.12: 5 residues within 4Å: Chain C: D.213, G.217, D.244, N.266, G.267 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.213, C:G.217, C:D.244, C:N.266, H2O.47, H2O.47 CA.16: 5 residues within 4Å: Chain D: D.213, G.217, D.244, N.266, G.267 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.213, D:G.217, D:D.244, D:N.266, H2O.70, H2O.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Characterization of two distinct neuraminidases from avian-origin human-infecting H7N9 influenza viruses. Cell Res. (2013)

Release Date

2013-11-20

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Neuraminidase

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