- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 4 residues within 4Å:- Chain A: N.2, F.3, N.5, N.154
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:N.2
- Hydrogen bonds: A:N.2, A:F.3, A:N.5
NAG.3: 2 residues within 4Å:- Chain A: N.65, W.357
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.65, A:W.357
NAG.7: 4 residues within 4Å:- Chain B: N.2, F.3, N.5, N.154
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:N.2
- Hydrogen bonds: B:N.2, B:F.3, B:N.5
NAG.8: 2 residues within 4Å:- Chain B: N.65, W.357
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.65, B:W.357
NAG.12: 4 residues within 4Å:- Chain C: N.2, F.3, N.5, N.154
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:N.2
- Hydrogen bonds: C:N.2, C:F.3, C:N.5
NAG.13: 2 residues within 4Å:- Chain C: N.65, W.357
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.65, C:W.357
NAG.17: 4 residues within 4Å:- Chain D: N.2, F.3, N.5, N.154
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:N.2
- Hydrogen bonds: D:N.2, D:F.3, D:N.5
NAG.18: 2 residues within 4Å:- Chain D: N.65, W.357
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.65, D:W.357
- 4 x CA: CALCIUM ION(Non-covalent)
CA.4: 5 residues within 4Å:- Chain A: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, H2O.1, H2O.4
CA.9: 5 residues within 4Å:- Chain B: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, H2O.19, H2O.21
CA.14: 5 residues within 4Å:- Chain C: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, H2O.36, H2O.38
CA.19: 5 residues within 4Å:- Chain D: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, H2O.53, H2O.55
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
G39.5: 14 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:W.98, A:A.166
- Hydrogen bonds: A:E.38, A:R.71, A:Y.324
- Water bridges: A:D.70, A:D.70, A:R.71, A:R.75, A:E.147, A:E.197, A:R.212
- Salt bridges: A:R.37, A:R.212, A:R.290
G39.10: 14 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:W.98, B:A.166
- Hydrogen bonds: B:E.38, B:R.71
- Water bridges: B:R.71, B:R.75, B:R.75, B:E.147, B:E.197, B:R.212
- Salt bridges: B:R.37, B:R.212, B:R.290
G39.15: 14 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:W.98, C:A.166
- Hydrogen bonds: C:E.38, C:R.71
- Water bridges: C:R.71, C:R.75, C:R.75, C:E.147, C:E.197, C:R.212
- Salt bridges: C:R.37, C:R.212, C:R.290
G39.20: 14 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:W.98, D:A.166
- Hydrogen bonds: D:E.38, D:R.71, D:Y.324
- Water bridges: D:D.70, D:D.70, D:R.71, D:R.75, D:E.147, D:E.197, D:R.212
- Salt bridges: D:R.37, D:R.212, D:R.290
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, Y. et al., Characterization of two distinct neuraminidases from avian-origin human-infecting H7N9 influenza viruses. Cell Res. (2013)
- Release Date
- 2013-11-20
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, Y. et al., Characterization of two distinct neuraminidases from avian-origin human-infecting H7N9 influenza viruses. Cell Res. (2013)
- Release Date
- 2013-11-20
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A