SMTL ID : 4mws.1

Crystal structure of human PPCA (trigonal crystal form 1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.1: 5 residues within 4Å: Chain A: N.117, T.119, E.120, R.313, L.315 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 5 residues within 4Å: Chain B: N.117, T.119, E.120, R.313, L.315 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: P.77, G.255, N.275, T.277 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.77, A:N.275, A:A.278 NAG.5: 3 residues within 4Å: Chain B: P.77, N.275, T.277 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.77, B:N.275, B:T.277

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 1 residues within 4Å: Chain A: R.314 No protein-ligand interaction detected (PLIP) GOL.6: 3 residues within 4Å: Chain B: G.57, N.309, R.314 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.57, B:N.309, B:R.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolli, N. et al., Proteolytic activation of human cathepsin A. J.Biol.Chem. (2014)

Release Date

2014-03-12

Peptides

Lysosomal protective protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysosomal protective protein

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