SMTL ID : 4mx2.2 (1 other biounit)

Crystal Structure of adenylosuccinate lyase from Leishmania donovani

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 18 residues within 4Å: Chain A: E.114, N.118, H.119, D.120, S.150, Q.151, N.154, Q.274, R.362, L.364, S.367, T.368, R.371 Chain B: R.41, Y.42, I.332, N.336 Chain C: H.197 20 PLIP interactions: 14 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:E.114, A:N.118, A:D.120, A:Q.151, A:N.154, A:Q.274, A:R.362, A:S.367, A:T.368, B:R.41, B:Y.42, B:Y.42, B:N.336 Water bridges: A:S.150, A:S.150, A:S.150, B:N.330 Salt bridges: A:R.371, B:R.41 pi-Stacking: A:H.119 AMP.3: 18 residues within 4Å: Chain A: R.41, Y.42, I.332, N.336 Chain B: E.114, N.118, H.119, D.120, S.150, Q.151, N.154, Q.274, R.362, L.364, S.367, T.368, R.371 Chain D: H.197 19 PLIP interactions: 13 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:E.114, B:N.118, B:D.120, B:N.154, B:Q.274, B:R.362, B:S.367, A:R.41, A:Y.42, A:Y.42, A:N.336 Water bridges: B:Q.151, B:Q.274, B:T.368, B:T.368, A:N.330 Salt bridges: B:R.371, A:R.41 pi-Stacking: B:H.119 AMP.4: 18 residues within 4Å: Chain A: H.197 Chain C: E.114, N.118, H.119, D.120, S.150, Q.151, N.154, Q.274, R.362, L.364, S.367, T.368, R.371 Chain D: R.41, Y.42, I.332, N.336 21 PLIP interactions: 16 interactions with chain C, 5 interactions with chain D Hydrogen bonds: C:E.114, C:E.114, C:N.118, C:D.120, C:N.154, C:Q.274, C:R.362, C:S.367, D:R.41, D:Y.42, D:Y.42, D:N.336 Water bridges: C:S.150, C:S.150, C:S.150, C:Q.274, C:T.368, C:T.368 Salt bridges: C:R.371, D:R.41 pi-Stacking: C:H.119 AMP.6: 17 residues within 4Å: Chain B: H.197 Chain C: R.41, Y.42, I.332, N.336 Chain D: N.118, H.119, D.120, S.150, Q.151, N.154, Q.274, R.362, L.364, S.367, T.368, R.371 20 PLIP interactions: 13 interactions with chain D, 7 interactions with chain C Hydrogen bonds: D:E.114, D:E.114, D:N.118, D:D.120, D:Q.274, D:R.362, D:S.367, C:R.41, C:Y.42, C:Y.42, C:Y.42, C:N.336 Water bridges: D:S.150, D:N.154, D:T.368, D:T.368, C:N.330 Salt bridges: D:R.371, C:R.41 pi-Stacking: D:H.119

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.122, H.145, L.148, T.149, S.150 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.148, A:S.150 Water bridges: A:H.119, A:S.150 Salt bridges: A:K.122, A:H.145 SO4.5: 5 residues within 4Å: Chain C: K.122, H.145, L.148, T.149, S.150 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:L.148, C:T.149, C:S.150, C:S.150 Water bridges: C:S.150, C:S.150 Salt bridges: C:K.122, C:H.145 SO4.7: 5 residues within 4Å: Chain D: K.122, H.145, L.148, T.149, S.150 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.149, D:S.150, D:S.150 Water bridges: D:Q.151 Salt bridges: D:K.122, D:H.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wernimont, A.K. et al., Crystal Structure of adenylosuccinate lyase from Leishmania donovani. To be Published

Release Date

2014-04-16

Peptides

Adenylosuccinate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
G

D
H

Adenylosuccinate lyase

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